BGSU RNA Site //

Equivalence class NR_20.0_68467.2 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
15LZS|1|2 (rep)Transfer RNAtRNA, mRNAOryctolagus cuniculusEukaryaRF00005Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.312016-11-30
25LZS|1|iiTransfer RNAtRNA, mRNAOryctolagus cuniculusEukaryaRF00005Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.312016-11-30
35LZV|1|2Transfer RNAP-site tRNA, mRNA (UGA stop codon)Oryctolagus cuniculusEukaryaRF00005Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.352016-11-30
45LZZ|1|2Transfer RNAP-site tRNA, mRNAOryctolagus cuniculusEukaryaRF00005Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.472016-11-30
55LZW|1|2Transfer RNAP-site tRNA, mRNA (truncated)Oryctolagus cuniculusEukaryaRF00005Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.ELECTRON MICROSCOPY3.532016-11-30
65LZX|1|2Transfer RNAP-site tRNA, mRNA (UGA stop codon)Oryctolagus cuniculusEukaryaRF00005Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.ELECTRON MICROSCOPY3.672016-11-30
75LZT|1|2Transfer RNAP-site tRNA, mRNA (UGA stop codon)Oryctolagus cuniculusEukaryaRF00005Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.ELECTRON MICROSCOPY3.652016-11-30
83JAH|1|2Transfer RNAtRNA(Val), mRNAOryctolagus cuniculusEukaryaRF00005Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.452015-08-12
93JAG|1|2Transfer RNAtRNA(Val), mRNAOryctolagus cuniculusEukaryaRF00005Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonELECTRON MICROSCOPY3.652015-08-12
103JAI|1|2Transfer RNAtRNA(Val), mRNAOryctolagus cuniculusEukaryaRF00005Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonELECTRON MICROSCOPY3.652015-08-12
116FTI|1|qTransfer RNAp-Site tRNAOryctolagus cuniculusEukaryaRF00005Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S RibosomeELECTRON MICROSCOPY4.22018-03-21
125LZU|1|2Transfer RNAP-site tRNA, mRNA (UGA stop codon)Oryctolagus cuniculusEukaryaRF00005Structure of the mammalian ribosomal termination complex with accommodated eRF1ELECTRON MICROSCOPY3.752016-11-30
133JAJ|1|3Transfer RNAVal tRNAOryctolagus cuniculusEukaryaRF00005Structure of the engaged state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.752015-08-05
143JAN|1|3Transfer RNAVal tRNAOryctolagus cuniculusEukaryaRF00005Structure of the scanning state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.752015-08-05

Release history

Release3.14
Date2018-03-22

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_68467.2NR_20.0_68467.13.14(12) 3JAG|1|2, 5LZZ|1|2, 5LZX|1|2, 5LZW|1|2, 5LZV|1|2, 5LZU|1|2, 5LZT|1|2, 5LZS|1|2, 3JAN|1|3, 3JAJ|1|3, 3JAI|1|2, 3JAH|1|2(2) 5LZS|1|ii, 6FTI|1|q(0)
NR_20.0_68467.2NR_20.0_93656.13.14(1) 5LZS|1|ii(13) 5LZV|1|2, 5LZU|1|2, 5LZT|1|2, 5LZS|1|2, 3JAN|1|3, 3JAJ|1|3, 3JAI|1|2, 3JAH|1|2, 3JAG|1|2, 6FTI|1|q, 5LZZ|1|2, 5LZX|1|2, 5LZW|1|2(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_68467.2NR_20.0_68467.33.15(14) 3JAI|1|2, 3JAH|1|2, 3JAG|1|2, 6FTI|1|q, 5LZZ|1|2, 5LZX|1|2, 5LZW|1|2, 5LZV|1|2, 5LZU|1|2, 5LZT|1|2, 5LZS|1|ii, 5LZS|1|2, 3JAN|1|3, 3JAJ|1|3(0) (1) 6FRK|1|2

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
13JAN|1|3Structure of the scanning state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.7576
23JAJ|1|3Structure of the engaged state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.7576
33JAI|1|2Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonELECTRON MICROSCOPY3.6576
43JAG|1|2Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonELECTRON MICROSCOPY3.6576
56FTI|1|qCryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S RibosomeELECTRON MICROSCOPY4.276
63JAH|1|2Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.4576
75LZV|1|2Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.3576
85LZT|1|2Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.ELECTRON MICROSCOPY3.6576
95LZW|1|2Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.ELECTRON MICROSCOPY3.5376
105LZX|1|2Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.ELECTRON MICROSCOPY3.6776
115LZZ|1|2Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.4776
125LZS|1|2Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.3176
135LZU|1|2Structure of the mammalian ribosomal termination complex with accommodated eRF1ELECTRON MICROSCOPY3.7576
145LZS|1|iiStructure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.3176