NR_20.0_69813.7

Members (39)
History
Heat map

#	IFE	Compound(s)	RNA source organism	Title	Method	Resolution	Date
1	6OF1\|1\|1w (rep)	A-site and E-site tRNAs, mRNA	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution	X-RAY DIFFRACTION	2.8	2019-04-17
2	5IBB\|1\|1K	tRNAVal, mRNA	Escherichia coli	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site	X-RAY DIFFRACTION	2.96	2016-05-25
3	6CAE\|1\|1y	A-site and E-site tRNAs	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution	X-RAY DIFFRACTION	2.6	2018-04-18
4	6O97\|1\|1w	A-site and E-site tRNAs, mRNA	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution	X-RAY DIFFRACTION	2.75	2019-04-17
5	6OF1\|1\|1y	A-site and E-site tRNAs	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution	X-RAY DIFFRACTION	2.8	2019-04-17
6	6BY1\|1\|AW	Valine-specific transfer RNA, Messenger RNA	Escherichia coli	E. coli pH03H9 complex	X-RAY DIFFRACTION	3.94	2019-02-27
7	6OF1\|1\|2w	A-site and E-site tRNAs, mRNA	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution	X-RAY DIFFRACTION	2.8	2019-04-17
8	6O97\|1\|1y	A-site and E-site tRNAs	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution	X-RAY DIFFRACTION	2.75	2019-04-17
9	6ND6\|1\|1y	A-site and E-site tRNAs	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution	X-RAY DIFFRACTION	2.85	2019-02-20
10	6BY1\|1\|BW	Valine-specific transfer RNA, Messenger RNA	Escherichia coli	E. coli pH03H9 complex	X-RAY DIFFRACTION	3.94	2019-02-27
11	5IBB\|1\|3L	tRNAVal	Escherichia coli	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site	X-RAY DIFFRACTION	2.96	2016-05-25
12	6CAE\|1\|1w	A-site and E-site tRNAs, mRNA	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution	X-RAY DIFFRACTION	2.6	2018-04-18
13	6BY1\|1\|BV	Valine-specific transfer RNA, Messenger RNA	Escherichia coli	E. coli pH03H9 complex	X-RAY DIFFRACTION	3.94	2019-02-27
14	6BY1\|1\|AV	Valine-specific transfer RNA, Messenger RNA	Escherichia coli	E. coli pH03H9 complex	X-RAY DIFFRACTION	3.94	2019-02-27
15	6OF1\|1\|2y	A-site and E-site tRNAs	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution	X-RAY DIFFRACTION	2.8	2019-04-17
16	6CAE\|1\|2y	A-site and E-site tRNAs	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution	X-RAY DIFFRACTION	2.6	2018-04-18
17	6ND6\|1\|1w	A-site and E-site tRNAs, mRNA	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution	X-RAY DIFFRACTION	2.85	2019-02-20
18	6CAE\|1\|2w	A-site and E-site tRNAs, mRNA	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution	X-RAY DIFFRACTION	2.6	2018-04-18
19	6O97\|1\|2y	A-site and E-site tRNAs	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution	X-RAY DIFFRACTION	2.75	2019-04-17
20	5IBB\|1\|3K	tRNAVal	Escherichia coli	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site	X-RAY DIFFRACTION	2.96	2016-05-25
21	6ND6\|1\|2y	A-site and E-site tRNAs	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution	X-RAY DIFFRACTION	2.85	2019-02-20
22	6O97\|1\|2w	A-site and E-site tRNAs, mRNA	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution	X-RAY DIFFRACTION	2.75	2019-04-17
23	6ND6\|1\|2w	A-site and E-site tRNAs, mRNA	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution	X-RAY DIFFRACTION	2.85	2019-02-20
24	6N1D\|1\|BPTN	P-tRNA	Escherichia coli	X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State	X-RAY DIFFRACTION	3.2	2019-04-03
25	6N1D\|1\|APTN	P-tRNA, mRNA	Escherichia coli	X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State	X-RAY DIFFRACTION	3.2	2019-04-03
26	6BY1\|1\|AY	Valine-specific transfer RNA, Messenger RNA	Escherichia coli	E. coli pH03H9 complex	X-RAY DIFFRACTION	3.94	2019-02-27
27	4V7A\|1\|A1	fMet-Val-tRNA-Val, 5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3'	Escherichia coli	E. coli 70S-fMetVal-tRNAVal post-translocation complex (post4)	ELECTRON MICROSCOPY	9	2014-07-09
28	4V6Y\|1\|A1	fMet-Val-tRNA-Val, 5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3'	Escherichia coli	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)	ELECTRON MICROSCOPY	12	2014-07-09
29	4V75\|1\|A1	fMet-Val-tRNA-Val, 5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3'	Escherichia coli	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1)	ELECTRON MICROSCOPY	12	2014-07-09
30	4V6Z\|1\|A1	fMet-Val-tRNA-Val, 5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3'	Escherichia coli	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b)	ELECTRON MICROSCOPY	12	2014-07-09
31	4V72\|1\|A1	fMet-Val-tRNA-Val, 5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3'	Escherichia coli	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)	ELECTRON MICROSCOPY	13	2014-07-09
32	4V73\|1\|A1	fMet-Val-tRNA-Val, 5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3'	Escherichia coli	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a)	ELECTRON MICROSCOPY	15	2014-07-09
33	4V79\|1\|A1	fMet-Val-tRNA-Val, 5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3'	Escherichia coli	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)	ELECTRON MICROSCOPY	15	2014-07-09
34	4V70\|1\|A1	fMet-Val-tRNA-Val, 5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3'	Escherichia coli	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3)	ELECTRON MICROSCOPY	17	2014-07-09
35	4V76\|1\|A1	fMet-Val-tRNA-Val, 5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3'	Escherichia coli	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)	ELECTRON MICROSCOPY	17	2014-07-09
36	4V77\|1\|A1	fMet-Val-tRNA-Val, 5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3'	Escherichia coli	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b)	ELECTRON MICROSCOPY	17	2014-07-09
37	4V74\|1\|A1	fMet-Val-tRNA-Val, 5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3'	Escherichia coli	70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b)	ELECTRON MICROSCOPY	17	2014-07-09
38	4V78\|1\|A1	fMet-Val-tRNA-Val, 5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3'	Escherichia coli	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)	ELECTRON MICROSCOPY	20	2014-07-09
39	4V71\|1\|A1	fMet-Val-tRNA-Val, 5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3'	Escherichia coli	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)	ELECTRON MICROSCOPY	20	2014-07-09

Release history

Release	3.70	3.71	3.72	3.73	3.74	3.75	3.76	3.77	3.78	3.79	3.80	3.81	3.82	3.83	3.84	3.85	3.86	3.87	3.88	3.89	3.90	3.91	3.92	3.93	3.94	3.95	3.96	3.97	3.98	3.99	3.100	3.101	3.102	3.103	3.104	3.105
Date	2019-04-19	2019-04-26	2019-05-03	2019-05-10	2019-05-17	2019-05-24	2019-05-31	2019-06-07	2019-06-14	2019-06-21	2019-06-28	2019-07-05	2019-07-12	2019-07-19	2019-07-26	2019-08-02	2019-08-09	2019-08-16	2019-08-23	2019-08-28	2019-09-04	2019-09-11	2019-09-19	2019-09-25	2019-10-03	2019-10-09	2019-10-16	2019-10-23	2019-10-30	2019-11-06	2019-11-13	2019-11-20	2019-11-29	2019-12-05	2019-12-11	2019-12-18

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_20.0_69813.7	NR_20.0_69813.6	3.70	(31) 4V76\|1\|A1, 6BY1\|1\|BW, 6ND6\|1\|1y, 4V6Y\|1\|A1, 4V7A\|1\|A1, 4V72\|1\|A1, 6BY1\|1\|AV, 6CAE\|1\|2y, 6BY1\|1\|BV, 4V79\|1\|A1, 4V71\|1\|A1, 5IBB\|1\|3L, 4V75\|1\|A1, 6ND6\|1\|1w, 6CAE\|1\|2w, 6BY1\|1\|AY, 4V78\|1\|A1, 4V70\|1\|A1, 5IBB\|1\|3K, 4V74\|1\|A1, 6ND6\|1\|2y, 6CAE\|1\|1y, 6N1D\|1\|BPTN, 4V77\|1\|A1, 4V6Z\|1\|A1, 5IBB\|1\|1K, 4V73\|1\|A1, 6BY1\|1\|AW, 6ND6\|1\|2w, 6CAE\|1\|1w, 6N1D\|1\|APTN	(8) 6O97\|1\|1w, 6OF1\|1\|1w, 6OF1\|1\|2y, 6O97\|1\|2y, 6OF1\|1\|2w, 6O97\|1\|2w, 6OF1\|1\|1y, 6O97\|1\|1y	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	4V74\|1\|A1	70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b)	ELECTRON MICROSCOPY	17	70
2	4V6Z\|1\|A1	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b)	ELECTRON MICROSCOPY	12	70
3	4V6Y\|1\|A1	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)	ELECTRON MICROSCOPY	12	70
4	6ND6\|1\|2w	Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution	X-RAY DIFFRACTION	2.85	67
5	6O97\|1\|2w	Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution	X-RAY DIFFRACTION	2.75	67
6	6ND6\|1\|1w	Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution	X-RAY DIFFRACTION	2.85	67
7	6O97\|1\|1w	Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution	X-RAY DIFFRACTION	2.75	67
8	6OF1\|1\|1w	Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution	X-RAY DIFFRACTION	2.8	67
9	6CAE\|1\|1w	Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution	X-RAY DIFFRACTION	2.6	67
10	6CAE\|1\|2w	Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution	X-RAY DIFFRACTION	2.6	67
11	6OF1\|1\|2w	Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution	X-RAY DIFFRACTION	2.8	67
12	4V75\|1\|A1	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1)	ELECTRON MICROSCOPY	12	70
13	6BY1\|1\|AW	E. coli pH03H9 complex	X-RAY DIFFRACTION	3.94	76
14	6BY1\|1\|BW	E. coli pH03H9 complex	X-RAY DIFFRACTION	3.94	76
15	6BY1\|1\|BV	E. coli pH03H9 complex	X-RAY DIFFRACTION	3.94	76
16	6BY1\|1\|AV	E. coli pH03H9 complex	X-RAY DIFFRACTION	3.94	76
17	5IBB\|1\|1K	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site	X-RAY DIFFRACTION	2.96	67
18	4V73\|1\|A1	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a)	ELECTRON MICROSCOPY	15	70
19	4V76\|1\|A1	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)	ELECTRON MICROSCOPY	17	70
20	6BY1\|1\|AY	E. coli pH03H9 complex	X-RAY DIFFRACTION	3.94	76
21	4V71\|1\|A1	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)	ELECTRON MICROSCOPY	20	70
22	6ND6\|1\|2y	Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution	X-RAY DIFFRACTION	2.85	67
23	6CAE\|1\|2y	Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution	X-RAY DIFFRACTION	2.6	67
24	6OF1\|1\|2y	Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution	X-RAY DIFFRACTION	2.8	67
25	6O97\|1\|2y	Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution	X-RAY DIFFRACTION	2.75	67
26	6O97\|1\|1y	Crystal structure of the Thermus thermophilus 70S ribosome in complex with propylamycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.75A resolution	X-RAY DIFFRACTION	2.75	67
27	6CAE\|1\|1y	Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution	X-RAY DIFFRACTION	2.6	68
28	6OF1\|1\|1y	Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution	X-RAY DIFFRACTION	2.8	67
29	6ND6\|1\|1y	Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.85A resolution	X-RAY DIFFRACTION	2.85	68
30	5IBB\|1\|3K	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site	X-RAY DIFFRACTION	2.96	70
31	5IBB\|1\|3L	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site	X-RAY DIFFRACTION	2.96	71
32	4V70\|1\|A1	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3)	ELECTRON MICROSCOPY	17	70
33	6N1D\|1\|APTN	X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State	X-RAY DIFFRACTION	3.2	70
34	6N1D\|1\|BPTN	X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State	X-RAY DIFFRACTION	3.2	70
35	4V72\|1\|A1	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)	ELECTRON MICROSCOPY	13	70
36	4V78\|1\|A1	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)	ELECTRON MICROSCOPY	20	70
37	4V7A\|1\|A1	E. coli 70S-fMetVal-tRNAVal post-translocation complex (post4)	ELECTRON MICROSCOPY	9	70
38	4V79\|1\|A1	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)	ELECTRON MICROSCOPY	15	70
39	4V77\|1\|A1	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b)	ELECTRON MICROSCOPY	17	70

Equivalence class NR_20.0_69813.7 Current

Release history

Parents

Children