BGSU RNA Site //

Equivalence class NR_20.0_71217.3 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
16ZMI|1|CC (rep)Transfer RNAtRNAHomo sapiensEukaryaRF00005SARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complexElectron microscopy2.62020-08-19
26ZM7|1|CCTransfer RNAtRNAHomo sapiensEukaryaRF00005SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complexElectron microscopy2.72020-07-29
36ZVH|1|xTransfer RNAE-site tRNAHomo sapiensEukaryaRF00005EDF1-ribosome complexElectron microscopy2.92020-08-19
46Z6N|1|CCTransfer RNAtRNAHomo sapiensEukaryaRF00005Cryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)Electron microscopy2.92020-07-29
56ZME|1|CCTransfer RNAtRNAHomo sapiensEukaryaRF00005SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complexElectron microscopy32020-08-12
67QVP|1|CCTransfer RNAtNRA E/EHomo sapiensEukaryaRF00005Human collided disome (di-ribosome) stalled on XBP1 mRNAElectron microscopy32022-10-12
76Z6L|1|CCTransfer RNAtRNAHomo sapiensEukaryaRF00005Cryo-EM structure of human CCDC124 bound to 80S ribosomesElectron microscopy32020-07-29
87OLD|1|5Transfer RNApe/E tRNAChaetomium thermophilum var. thermophilum DSM 1495EukaryaRF00005Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST stateElectron microscopy32022-01-26
96ZMO|1|CCTransfer RNAtRNAHomo sapiensEukaryaRF00005SARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complexElectron microscopy3.12020-08-19

Release history

Release3.2523.2533.2543.2553.2563.2573.2583.2593.2603.2613.2623.2633.2643.2653.2663.2673.2683.2693.2703.2713.2723.2733.2743.2753.276
Date2022-10-122022-10-192022-10-262022-11-022022-11-092022-11-162022-11-232022-11-302022-12-072022-12-142022-12-212022-12-282023-01-042023-01-112023-01-182023-01-252023-02-012023-02-082023-02-152023-02-222023-03-012023-03-082023-03-152023-03-222023-03-29

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_71217.3NR_20.0_71217.23.252(8) 6Z6L|1|CC, 7OLD|1|5, 6ZVH|1|x, 6ZMO|1|CC, 6ZMI|1|CC, 6ZME|1|CC, 6ZM7|1|CC, 6Z6N|1|CC(1) 7QVP|1|CC(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_71217.3NR_20.0_71217.43.277(9) 6ZVH|1|x, 6ZMO|1|CC, 6ZMI|1|CC, 6ZME|1|CC, 6ZM7|1|CC, 6Z6N|1|CC, 6Z6L|1|CC, 7QVP|1|CC, 7OLD|1|5(0) (1) 7XNX|1|CC

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16ZVH|1|xEDF1-ribosome complexELECTRON MICROSCOPY2.975
26ZMO|1|CCSARS-CoV-2 Nsp1 bound to the human LYAR-80S-eEF1a ribosome complexELECTRON MICROSCOPY3.175
36ZMI|1|CCSARS-CoV-2 Nsp1 bound to the human LYAR-80S ribosome complexELECTRON MICROSCOPY2.675
46ZM7|1|CCSARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complexELECTRON MICROSCOPY2.775
56ZME|1|CCSARS-CoV-2 Nsp1 bound to the human CCDC124-80S-eERF1 ribosome complexELECTRON MICROSCOPY375
66Z6L|1|CCCryo-EM structure of human CCDC124 bound to 80S ribosomesELECTRON MICROSCOPY375
77QVP|1|CCHuman collided disome (di-ribosome) stalled on XBP1 mRNAELECTRON MICROSCOPY375
86Z6N|1|CCCryo-EM structure of human EBP1-80S ribosomes (focus on EBP1)ELECTRON MICROSCOPY2.975
97OLD|1|5Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST stateELECTRON MICROSCOPY375