Equivalence class NR_20.0_72500.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4WZJ|1|YYYY (rep) | U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor. | Homo sapiens | Spliceosomal U4 snRNP core domain | X-ray diffraction | 3.6 | 2015-01-14 | |||
| 2 | 4WZJ|1|V | U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor. | Homo sapiens | Spliceosomal U4 snRNP core domain | X-ray diffraction | 3.6 | 2015-01-14 | |||
| 3 | 4WZJ|1|VV | U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor. | Homo sapiens | Spliceosomal U4 snRNP core domain | X-ray diffraction | 3.6 | 2015-01-14 | |||
| 4 | 4WZJ|1|VVV | U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor. | Homo sapiens | Spliceosomal U4 snRNP core domain | X-ray diffraction | 3.6 | 2015-01-14 | |||
| 5 | 4WZJ|1|VVVV | U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor. | Homo sapiens | Spliceosomal U4 snRNP core domain | X-ray diffraction | 3.6 | 2015-01-14 | |||
| 6 | 4WZJ|1|X | U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor. | Homo sapiens | Spliceosomal U4 snRNP core domain | X-ray diffraction | 3.6 | 2015-01-14 | |||
| 7 | 4WZJ|1|XX | U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor. | Homo sapiens | Spliceosomal U4 snRNP core domain | X-ray diffraction | 3.6 | 2015-01-14 | |||
| 8 | 4WZJ|1|XXX | U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor. | Homo sapiens | Spliceosomal U4 snRNP core domain | X-ray diffraction | 3.6 | 2015-01-14 | |||
| 9 | 4WZJ|1|XXXX | U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor. | Homo sapiens | Spliceosomal U4 snRNP core domain | X-ray diffraction | 3.6 | 2015-01-14 | |||
| 10 | 4WZJ|1|Y | U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor. | Homo sapiens | Spliceosomal U4 snRNP core domain | X-ray diffraction | 3.6 | 2015-01-14 | |||
| 11 | 4WZJ|1|YY | U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor. | Homo sapiens | Spliceosomal U4 snRNP core domain | X-ray diffraction | 3.6 | 2015-01-14 | |||
| 12 | 4WZJ|1|YYY | U4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor. | Homo sapiens | Spliceosomal U4 snRNP core domain | X-ray diffraction | 3.6 | 2015-01-14 |
Release history
| Release | 2.6 | 2.7 | 2.8 | 2.9 | 2.10 | 2.11 | 2.12 | 2.13 | 2.14 | 2.15 | 2.16 | 2.17 | 2.18 | 2.19 | 2.20 | 2.21 | 2.22 | 2.23 | 2.24 | 2.25 | 2.26 | 2.27 | 2.28 | 2.29 | 2.30 | 2.31 | 2.32 | 2.33 | 2.34 | 2.35 | 2.36 | 2.37 | 2.38 | 2.39 | 2.40 | 2.41 | 2.42 | 2.43 | 2.44 | 2.45 | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 | 2.69 | 2.70 | 2.71 | 2.72 | 2.73 | 2.74 | 2.75 | 2.76 | 2.77 | 2.78 | 2.79 | 2.80 | 2.81 | 2.82 | 2.83 | 2.84 | 2.85 | 2.86 | 2.87 | 2.88 | 2.89 | 2.90 | 2.91 | 2.92 | 2.93 | 2.94 | 2.95 | 2.96 | 2.97 | 2.98 | 2.99 | 2.100 | 2.101 | 2.102 | 2.103 | 2.104 | 2.105 | 2.106 | 2.107 | 2.108 | 2.109 | 2.110 | 2.111 | 2.112 | 2.113 | 2.114 | 2.115 | 2.116 | 2.117 | 2.118 | 2.119 | 2.120 | 2.121 | 2.122 | 2.123 | 2.124 | 2.125 | 2.126 | 2.127 | 2.128 | 2.129 | 2.130 | 2.131 | 2.132 | 2.133 | 2.134 | 2.135 | 2.136 | 2.137 | 2.138 | 2.139 | 2.140 | 2.141 | 2.142 | 2.143 | 2.144 | 2.145 | 2.146 | 2.147 | 2.148 | 2.149 | 2.150 | 2.151 | 2.152 | 2.153 | 2.154 | 2.155 | 2.156 | 2.157 | 2.158 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2015-01-16 | 2015-01-23 | 2015-01-30 | 2015-02-06 | 2015-02-13 | 2015-02-20 | 2015-02-27 | 2015-03-06 | 2015-03-13 | 2015-03-20 | 2015-03-27 | 2015-04-03 | 2015-04-10 | 2015-04-17 | 2015-04-24 | 2015-05-01 | 2015-05-08 | 2015-05-15 | 2015-05-22 | 2015-05-29 | 2015-06-05 | 2015-06-12 | 2015-06-19 | 2015-06-26 | 2015-07-03 | 2015-07-10 | 2015-07-17 | 2015-07-24 | 2015-07-31 | 2015-08-07 | 2015-08-14 | 2015-08-21 | 2015-08-28 | 2015-09-04 | 2015-09-11 | 2015-09-18 | 2015-09-25 | 2015-10-02 | 2015-10-09 | 2015-10-16 | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 | 2016-04-01 | 2016-04-08 | 2016-04-15 | 2016-04-22 | 2016-04-29 | 2016-05-06 | 2016-05-13 | 2016-05-20 | 2016-05-27 | 2016-06-03 | 2016-06-10 | 2016-06-17 | 2016-06-24 | 2016-07-01 | 2016-07-08 | 2016-07-15 | 2016-07-22 | 2016-07-29 | 2016-08-05 | 2016-08-12 | 2016-08-19 | 2016-08-26 | 2016-09-02 | 2016-09-09 | 2016-09-16 | 2016-09-23 | 2016-09-30 | 2016-10-07 | 2016-10-14 | 2016-10-21 | 2016-10-28 | 2016-11-04 | 2016-11-11 | 2016-11-18 | 2016-11-25 | 2016-12-02 | 2016-12-09 | 2016-12-16 | 2016-12-23 | 2016-12-30 | 2017-01-06 | 2017-01-13 | 2017-01-20 | 2017-01-27 | 2017-02-03 | 2017-02-10 | 2017-02-17 | 2017-02-24 | 2017-03-03 | 2017-03-10 | 2017-03-17 | 2017-03-24 | 2017-03-31 | 2017-04-11 | 2017-04-15 | 2017-04-26 | 2017-04-29 | 2017-05-09 | 2017-05-15 | 2017-05-20 | 2017-05-27 | 2017-06-07 | 2017-06-11 | 2017-06-21 | 2017-06-24 | 2017-06-28 | 2017-07-04 | 2017-07-10 | 2017-07-15 | 2017-07-26 | 2017-07-31 | 2017-08-05 | 2017-08-12 | 2017-08-19 | 2017-08-26 | 2017-09-03 | 2017-09-09 | 2017-09-16 | 2017-09-23 | 2017-09-30 | 2017-10-07 | 2017-10-14 | 2017-10-21 | 2017-10-28 | 2017-11-03 | 2017-11-10 | 2017-11-17 | 2017-11-24 | 2017-12-01 | 2017-12-08 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_20.0_72500.1 | NR_20.0_68566.1 | 3.0 | (12) 4WZJ|1|VVVV, 4WZJ|1|YYYY, 4WZJ|1|XX, 4WZJ|1|XXX, 4WZJ|1|XXXX, 4WZJ|1|VV, 4WZJ|1|YY, 4WZJ|1|VVV, 4WZJ|1|YYY, 4WZJ|1|X, 4WZJ|1|V, 4WZJ|1|Y | (0) | (12) 4V5U|1|CY, 4V5U|1|AV, 4V5U|1|BX, 4V5U|1|CX, 4V5U|1|DY, 4V5U|1|BV, 4V5U|1|CV, 4V5U|1|DX, 4V5U|1|AY, 4V5U|1|BY, 4V5U|1|DV, 4V5U|1|AX |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4WZJ|1|Y | Spliceosomal U4 snRNP core domain | X-RAY DIFFRACTION | 3.6 | 68 |
| 2 | 4WZJ|1|X | Spliceosomal U4 snRNP core domain | X-RAY DIFFRACTION | 3.6 | 68 |
| 3 | 4WZJ|1|VV | Spliceosomal U4 snRNP core domain | X-RAY DIFFRACTION | 3.6 | 68 |
| 4 | 4WZJ|1|VVVV | Spliceosomal U4 snRNP core domain | X-RAY DIFFRACTION | 3.6 | 68 |
| 5 | 4WZJ|1|XXX | Spliceosomal U4 snRNP core domain | X-RAY DIFFRACTION | 3.6 | 68 |
| 6 | 4WZJ|1|YY | Spliceosomal U4 snRNP core domain | X-RAY DIFFRACTION | 3.6 | 68 |
| 7 | 4WZJ|1|YYYY | Spliceosomal U4 snRNP core domain | X-RAY DIFFRACTION | 3.6 | 68 |
| 8 | 4WZJ|1|XXXX | Spliceosomal U4 snRNP core domain | X-RAY DIFFRACTION | 3.6 | 68 |
| 9 | 4WZJ|1|VVV | Spliceosomal U4 snRNP core domain | X-RAY DIFFRACTION | 3.6 | 68 |
| 10 | 4WZJ|1|YYY | Spliceosomal U4 snRNP core domain | X-RAY DIFFRACTION | 3.6 | 68 |
| 11 | 4WZJ|1|XX | Spliceosomal U4 snRNP core domain | X-RAY DIFFRACTION | 3.6 | 68 |
| 12 | 4WZJ|1|V | Spliceosomal U4 snRNP core domain | X-RAY DIFFRACTION | 3.6 | 68 |
Coloring options: