Equivalence class NR_20.0_73216.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4WSM|1|1K (rep) | Transfer RNA | tRNA-Leu, mRNA | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-ray diffraction | 3.3 | 2015-06-10 |
| 2 | 4WSM|1|2K | Transfer RNA | tRNA-Leu, mRNA | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-ray diffraction | 3.3 | 2015-06-10 |
| 3 | 4WSM|1|2L | Transfer RNA | tRNA-Leu, mRNA | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-ray diffraction | 3.3 | 2015-06-10 |
| 4 | 4WSM|1|1L | Transfer RNA | tRNA-Leu, mRNA | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-ray diffraction | 3.3 | 2015-06-10 |
| 5 | 4V87|1|BB | Transfer RNA | TRNA-LEU, MRNA | synthetic construct | Synthetic | RF00005 | Crystal structure analysis of ribosomal decoding. | X-ray diffraction | 3.1 | 2014-07-09 |
| 6 | 4V87|1|CB | Transfer RNA | TRNA-LEU, MRNA | synthetic construct | Synthetic | RF00005 | Crystal structure analysis of ribosomal decoding. | X-ray diffraction | 3.1 | 2014-07-09 |
| 7 | 4V8B|1|AB | Transfer RNA | TRNA-LEU, MRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-ray diffraction | 3 | 2014-07-09 |
| 8 | 4V8C|1|CB | Transfer RNA | TRNA-LEU, MRNA | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-ray diffraction | 3.3 | 2014-07-09 | ||
| 9 | 4V8C|1|DB | Transfer RNA | TRNA-LEU, MRNA | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-ray diffraction | 3.3 | 2014-07-09 | ||
| 10 | 4V8B|1|CB | Transfer RNA | TRNA-LEU, MRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-ray diffraction | 3 | 2014-07-09 |
| 11 | 6HA1|1|x | Transfer RNA | P-tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin | Electron microscopy | 3.1 | 2018-08-29 |
| 12 | 6D9J|1|3 | Transfer RNA | P-site tRNA | Escherichia coli | Bacteria | RF00005 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1. | Electron microscopy | 3.2 | 2018-06-06 |
| 13 | 6D90|1|3 | Transfer RNA | P-tRNA | Escherichia coli | Bacteria | RF00005 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1. | Electron microscopy | 3.2 | 2018-06-06 |
| 14 | 5KCR|1|1x | Transfer RNA | P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution | Electron microscopy | 3.6 | 2016-08-17 |
Release history
| Release | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-05-24 | 2019-05-31 | 2019-06-07 | 2019-06-14 | 2019-06-21 | 2019-06-28 | 2019-07-05 | 2019-07-12 | 2019-07-19 | 2019-07-26 | 2019-08-02 | 2019-08-09 | 2019-08-16 | 2019-08-23 | 2019-08-28 | 2019-09-04 | 2019-09-11 | 2019-09-19 | 2019-09-25 | 2019-10-03 | 2019-10-09 | 2019-10-16 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_73216.1 | NR_20.0_17348.1 | 3.75 | (1) 6HA1|1|x | (13) 6D9J|1|3, 6D90|1|3, 5KCR|1|1x, 4WSM|1|2L, 4WSM|1|2K, 4WSM|1|1L, 4WSM|1|1K, 4V8C|1|DB, 4V8C|1|CB, 4V8B|1|CB, 4V8B|1|AB, 4V87|1|CB, 4V87|1|BB | (0) |
| NR_20.0_73216.1 | NR_20.0_32143.1 | 3.75 | (1) 6D9J|1|3 | (13) 6HA1|1|x, 6D90|1|3, 5KCR|1|1x, 4WSM|1|2L, 4WSM|1|2K, 4WSM|1|1L, 4WSM|1|1K, 4V8C|1|DB, 4V8C|1|CB, 4V8B|1|CB, 4V8B|1|AB, 4V87|1|CB, 4V87|1|BB | (0) |
| NR_20.0_73216.1 | NR_20.0_40540.1 | 3.75 | (11) 4V87|1|BB, 5KCR|1|1x, 4WSM|1|2L, 4WSM|1|2K, 4WSM|1|1L, 4WSM|1|1K, 4V8C|1|DB, 4V8C|1|CB, 4V8B|1|CB, 4V8B|1|AB, 4V87|1|CB | (3) 6HA1|1|x, 6D9J|1|3, 6D90|1|3 | (0) |
| NR_20.0_73216.1 | NR_20.0_53772.1 | 3.75 | (1) 6D90|1|3 | (13) 4V87|1|CB, 4V87|1|BB, 6HA1|1|x, 6D9J|1|3, 5KCR|1|1x, 4WSM|1|2L, 4WSM|1|2K, 4WSM|1|1L, 4WSM|1|1K, 4V8C|1|DB, 4V8C|1|CB, 4V8B|1|CB, 4V8B|1|AB | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_20.0_73216.1 | NR_20.0_73216.2 | 3.97 | (14) 4V8C|1|CB, 4WSM|1|2K, 6D90|1|3, 4V87|1|CB, 4WSM|1|1L, 5KCR|1|1x, 6HA1|1|x, 4V87|1|BB, 4V8B|1|CB, 4WSM|1|1K, 4WSM|1|2L, 6D9J|1|3, 4V8B|1|AB, 4V8C|1|DB | (0) | (5) 2NRE|1|F, 2NR0|1|E, 2NR0|1|F, 2NR0|1|H, 2NR0|1|G |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4WSM|1|2L | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-RAY DIFFRACTION | 3.3 | 74 |
| 2 | 4WSM|1|1L | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-RAY DIFFRACTION | 3.3 | 83 |
| 3 | 4V8C|1|DB | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-RAY DIFFRACTION | 3.3 | 87 |
| 4 | 4V8B|1|CB | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-RAY DIFFRACTION | 3 | 87 |
| 5 | 4V87|1|CB | Crystal structure analysis of ribosomal decoding. | X-RAY DIFFRACTION | 3.1 | 87 |
| 6 | 4V8C|1|CB | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-RAY DIFFRACTION | 3.3 | 87 |
| 7 | 4V87|1|BB | Crystal structure analysis of ribosomal decoding. | X-RAY DIFFRACTION | 3.1 | 87 |
| 8 | 4V8B|1|AB | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-RAY DIFFRACTION | 3 | 87 |
| 9 | 4WSM|1|1K | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-RAY DIFFRACTION | 3.3 | 83 |
| 10 | 6HA1|1|x | Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin | ELECTRON MICROSCOPY | 3.1 | 87 |
| 11 | 5KCR|1|1x | Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution | ELECTRON MICROSCOPY | 3.6 | 87 |
| 12 | 6D9J|1|3 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1. | ELECTRON MICROSCOPY | 3.2 | 87 |
| 13 | 6D90|1|3 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1. | ELECTRON MICROSCOPY | 3.2 | 87 |
| 14 | 4WSM|1|2K | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-RAY DIFFRACTION | 3.3 | 73 |