Equivalence class NR_20.0_73216.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Domain | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4WSM|1|1K (rep) | Transfer RNA | tRNA-Leu, mRNA | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-ray diffraction | 3.3 | 2015-06-10 |
| 2 | 4WSM|1|2K | Transfer RNA | tRNA-Leu, mRNA | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-ray diffraction | 3.3 | 2015-06-10 |
| 3 | 4WSM|1|2L | Transfer RNA | tRNA-Leu, mRNA | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-ray diffraction | 3.3 | 2015-06-10 |
| 4 | 4WSM|1|1L | Transfer RNA | tRNA-Leu, mRNA | Escherichia coli | Bacteria | RF00005 | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-ray diffraction | 3.3 | 2015-06-10 |
| 5 | 4V87|1|BB | Transfer RNA | TRNA-LEU, MRNA | synthetic construct | Synthetic | RF00005 | Crystal structure analysis of ribosomal decoding. | X-ray diffraction | 3.1 | 2014-07-09 |
| 6 | 4V87|1|CB | Transfer RNA | TRNA-LEU, MRNA | synthetic construct | Synthetic | RF00005 | Crystal structure analysis of ribosomal decoding. | X-ray diffraction | 3.1 | 2014-07-09 |
| 7 | 4V8B|1|AB | Transfer RNA | TRNA-LEU, MRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-ray diffraction | 3 | 2014-07-09 |
| 8 | 4V8C|1|CB | Transfer RNA | TRNA-LEU, MRNA | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-ray diffraction | 3.3 | 2014-07-09 | ||
| 9 | 4V8C|1|DB | Transfer RNA | TRNA-LEU, MRNA | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-ray diffraction | 3.3 | 2014-07-09 | ||
| 10 | 2NR0|1|E | Transfer RNA | leucyl tRNA | RF00005 | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-ray diffraction | 3.9 | 2007-05-15 | ||
| 11 | 2NR0|1|H | Transfer RNA | leucyl tRNA | RF00005 | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-ray diffraction | 3.9 | 2007-05-15 | ||
| 12 | 2NR0|1|F | Transfer RNA | leucyl tRNA | RF00005 | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-ray diffraction | 3.9 | 2007-05-15 | ||
| 13 | 2NRE|1|F | Transfer RNA | leucyl tRNA | RF00005 | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-ray diffraction | 4 | 2007-05-15 | ||
| 14 | 2NR0|1|G | Transfer RNA | leucyl tRNA | RF00005 | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-ray diffraction | 3.9 | 2007-05-15 | ||
| 15 | 4V8B|1|CB | Transfer RNA | TRNA-LEU, MRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-ray diffraction | 3 | 2014-07-09 |
| 16 | 6HA1|1|x | Transfer RNA | P-tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin | Electron microscopy | 3.1 | 2018-08-29 |
| 17 | 6D9J|1|3 | Transfer RNA | P-site tRNA | Escherichia coli | Bacteria | RF00005 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1. | Electron microscopy | 3.2 | 2018-06-06 |
| 18 | 6D90|1|3 | Transfer RNA | P-tRNA | Escherichia coli | Bacteria | RF00005 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1. | Electron microscopy | 3.2 | 2018-06-06 |
| 19 | 5KCR|1|1x | Transfer RNA | P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution | Electron microscopy | 3.6 | 2016-08-17 |
Release history
| Release | 3.97 |
|---|---|
| Date | 2019-10-23 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_73216.2 | NR_20.0_14663.1 | 3.97 | (5) 2NR0|1|G, 2NRE|1|F, 2NR0|1|F, 2NR0|1|H, 2NR0|1|E | (14) 4V8B|1|AB, 4WSM|1|1K, 4V87|1|CB, 4V8C|1|DB, 4V87|1|BB, 4V8C|1|CB, 6HA1|1|x, 4V8B|1|CB, 6D9J|1|3, 6D90|1|3, 5KCR|1|1x, 4WSM|1|2L, 4WSM|1|2K, 4WSM|1|1L | (0) |
| NR_20.0_73216.2 | NR_20.0_73216.1 | 3.97 | (14) 6D90|1|3, 4V8C|1|CB, 5KCR|1|1x, 4V8B|1|CB, 4WSM|1|2L, 4V8B|1|AB, 4WSM|1|2K, 4V87|1|CB, 4WSM|1|1L, 6HA1|1|x, 4V87|1|BB, 4WSM|1|1K, 6D9J|1|3, 4V8C|1|DB | (5) 2NR0|1|F, 2NRE|1|F, 2NR0|1|E, 2NR0|1|H, 2NR0|1|G | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_20.0_73216.2 | NR_20.0_42604.1 | 3.98 | (5) 2NR0|1|E, 2NR0|1|F, 2NR0|1|G, 2NRE|1|F, 2NR0|1|H | (14) 4WSM|1|2L, 6D90|1|3, 6HA1|1|x, 4V87|1|CB, 4V8B|1|AB, 4V8C|1|CB, 4WSM|1|1K, 4WSM|1|2K, 5KCR|1|1x, 4V8B|1|CB, 6D9J|1|3, 4V8C|1|DB, 4WSM|1|1L, 4V87|1|BB | (0) |
| NR_20.0_73216.2 | NR_20.0_73216.3 | 3.98 | (14) 4WSM|1|1L, 5KCR|1|1x, 6HA1|1|x, 4V87|1|BB, 4V8B|1|CB, 4V8C|1|DB, 4WSM|1|2K, 6D9J|1|3, 4V8B|1|AB, 4V87|1|CB, 4V8C|1|CB, 4WSM|1|1K, 4WSM|1|2L, 6D90|1|3 | (5) 2NR0|1|E, 2NR0|1|F, 2NR0|1|G, 2NR0|1|H, 2NRE|1|F | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4WSM|1|2L | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-RAY DIFFRACTION | 3.3 | 74 |
| 2 | 6HA1|1|x | Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin | ELECTRON MICROSCOPY | 3.1 | 87 |
| 3 | 5KCR|1|1x | Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution | ELECTRON MICROSCOPY | 3.6 | 87 |
| 4 | 4WSM|1|1K | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-RAY DIFFRACTION | 3.3 | 83 |
| 5 | 4V8B|1|AB | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-RAY DIFFRACTION | 3 | 87 |
| 6 | 4V87|1|BB | Crystal structure analysis of ribosomal decoding. | X-RAY DIFFRACTION | 3.1 | 87 |
| 7 | 4V8C|1|CB | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-RAY DIFFRACTION | 3.3 | 87 |
| 8 | 4V8C|1|DB | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-RAY DIFFRACTION | 3.3 | 87 |
| 9 | 4V87|1|CB | Crystal structure analysis of ribosomal decoding. | X-RAY DIFFRACTION | 3.1 | 87 |
| 10 | 4V8B|1|CB | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-RAY DIFFRACTION | 3 | 87 |
| 11 | 4WSM|1|1L | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-RAY DIFFRACTION | 3.3 | 83 |
| 12 | 6D9J|1|3 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1. | ELECTRON MICROSCOPY | 3.2 | 87 |
| 13 | 6D90|1|3 | Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1. | ELECTRON MICROSCOPY | 3.2 | 87 |
| 14 | 4WSM|1|2K | Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites | X-RAY DIFFRACTION | 3.3 | 73 |
| 15 | 2NRE|1|F | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-RAY DIFFRACTION | 4 | 56 |
| 16 | 2NR0|1|E | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-RAY DIFFRACTION | 3.9 | 81 |
| 17 | 2NR0|1|H | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-RAY DIFFRACTION | 3.9 | 65 |
| 18 | 2NR0|1|G | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-RAY DIFFRACTION | 3.9 | 67 |
| 19 | 2NR0|1|F | Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA | X-RAY DIFFRACTION | 3.9 | 74 |