Equivalence class NR_20.0_73286.16 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6QW6|1|5 (rep) | U5 spliceosomal RNA | U5 snRNA | Homo sapiens | Eukarya | RF00020 | Structure of the human U5.U4/U6 tri-snRNP at 2.9A resolution. | Electron microscopy | 2.92 | 2019-04-17 |
| 2 | 7DVQ|1|B | U5 spliceosomal RNA | U5 snRNA, pre-mRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM Structure of the Activated Human Minor Spliceosome (minor Bact Complex) | Electron microscopy | 2.89 | 2021-03-31 |
| 3 | 6QX9|1|5 | U5 spliceosomal RNA | U5 snRNA | Homo sapiens | Eukarya | RF00020 | Structure of a human fully-assembled precatalytic spliceosome (pre-B complex). | Electron microscopy | 3.28 | 2019-04-17 |
| 4 | 6QDV|1|5 | U5 spliceosomal RNA | U5 snRNA, Ligated exons: MINX mRNA | Homo sapiens | Eukarya | RF00020 | Human post-catalytic P complex spliceosome | Electron microscopy | 3.3 | 2019-02-20 |
| 5 | 6ZYM|1|5 | U5 spliceosomal RNA | U5 snRNA, pre-mRNA | Homo sapiens | Eukarya | RF00020 | Human C Complex Spliceosome - High-resolution CORE | Electron microscopy | 3.4 | 2020-10-14 |
| 6 | 6ICZ|1|B | U5 spliceosomal RNA | U5snRNA, pre-mRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstrom | Electron microscopy | 3 | 2019-03-13 |
| 7 | 7W59|1|B | U5 spliceosomal RNA | U5 snRNA, pre-mRNA | Homo sapiens | Eukarya | RF00020 | The cryo-EM structure of human pre-C*-I complex | Electron microscopy | 3.6 | 2022-06-22 |
| 8 | 7W5A|1|B | U5 spliceosomal RNA | U5 snRNA, Pre-mRNA | Homo sapiens | Eukarya | RF00020 | The cryo-EM structure of human pre-C*-II complex | Electron microscopy | 3.6 | 2022-06-22 |
| 9 | 6FF4|1|5 | U5 spliceosomal RNA | U5 snRNA, U2 snRNA, pre mRNA | Homo sapiens | Eukarya | RF00020 | human Bact spliceosome core structure | Electron microscopy | 3.4 | 2018-08-29 |
| 10 | 6ID0|1|B | U5 spliceosomal RNA | U5snRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of a human intron lariat spliceosome prior to Prp43 loaded (ILS1 complex) at 2.9 angstrom resolution | Electron microscopy | 2.9 | 2019-03-13 |
| 11 | 5XJC|1|B | U5 spliceosomal RNA | U5 snRNA, pre-mRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom | Electron microscopy | 3.6 | 2017-07-05 |
| 12 | 6ID1|1|B | U5 spliceosomal RNA | U5snRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of a human intron lariat spliceosome after Prp43 loaded (ILS2 complex) at 2.9 angstrom resolution | Electron microscopy | 2.86 | 2019-03-13 |
| 13 | 7W5B|1|B | U5 spliceosomal RNA | U5 snRNA, Pre-mRNA | Homo sapiens | Eukarya | RF00020 | The cryo-EM structure of human C* complex | Electron microscopy | 4.3 | 2022-06-22 |
| 14 | 7AAV|1|5 | U5 spliceosomal RNA | U5 snRNA, MINX M3 pre-mRNA | Homo sapiens | Eukarya | RF00020 | Human pre-Bact-2 spliceosome core structure | Electron microscopy | 4.2 | 2020-12-09 |
| 15 | 5YZG|1|B | U5 spliceosomal RNA | U5 snRNA, Pre-mRNA | Homo sapiens | Eukarya | RF00020 | The Cryo-EM Structure of Human Catalytic Step I Spliceosome (C complex) at 4.1 angstrom resolution | Electron microscopy | 4.1 | 2018-08-08 |
| 16 | 6AHD|1|B | U5 spliceosomal RNA | U5snRNA, pre-mRNA | Homo sapiens | Eukarya | RF00020 | The Cryo-EM Structure of Human Pre-catalytic Spliceosome (B complex) at 3.8 angstrom resolution | Electron microscopy | 3.8 | 2018-11-14 |
| 17 | 5O9Z|1|5 | U5 spliceosomal RNA | Homo sapiens U5 A small nuclear RNA, MINX pre-mRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of a pre-catalytic human spliceosome primed for activation (B complex) | Electron microscopy | 4.5 | 2017-08-16 |
| 18 | 6FF7|1|5 | U5 spliceosomal RNA | U5 snRNA, U2 snRNA, pre-mRNA | Homo sapiens | Eukarya | RF00020 | human Bact spliceosome core structure | Electron microscopy | 4.5 | 2019-03-13 |
| 19 | 7ABF|1|5 | U5 spliceosomal RNA | U5 small nuclear RNA, MINX M3 RNA | Homo sapiens | Eukarya | RF00020 | Human pre-Bact-1 spliceosome core structure | Electron microscopy | 3.9 | 2020-12-09 |
| 20 | 5Z58|1|B | U5 spliceosomal RNA | U5 snRNA, pre-mRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of a human activated spliceosome (early Bact) at 4.9 angstrom. | Electron microscopy | 4.9 | 2018-09-19 |
| 21 | 7A5P|1|5 | U5 spliceosomal RNA | U5 snRNA | Homo sapiens | Eukarya | RF00020 | Human C Complex Spliceosome - Medium-resolution PERIPHERY | Electron microscopy | 5 | 2020-10-14 |
| 22 | 5Z56|1|B | U5 spliceosomal RNA | U5 snRNA, pre-mRNA | Homo sapiens | Eukarya | RF00020 | cryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom. | Electron microscopy | 5.1 | 2018-09-19 |
| 23 | 6AH0|1|B | U5 spliceosomal RNA | U5snRNA | Homo sapiens | Eukarya | RF00020 | The Cryo-EM Structure of the Precusor of Human Pre-catalytic Spliceosome (pre-B complex) | Electron microscopy | 5.7 | 2018-11-14 |
| 24 | 5MQF|1|5 | U5 spliceosomal RNA | Homo sapiens U5 A small nuclear RNA, MINX pre-mRNA (intron) | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex) | Electron microscopy | 5.9 | 2017-03-22 |
| 25 | 5Z57|1|B | U5 spliceosomal RNA | U5 snRNA, pre-mRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of the human activated spliceosome (late Bact) at 6.5 angstrom | Electron microscopy | 6.5 | 2018-09-19 |
| 26 | 3JCR|1|H | U5 spliceosomal RNA | U5 snRNA | Homo sapiens | Eukarya | RF00020 | 3D structure determination of the human*U4/U6.U5* tri-snRNP complex | Electron microscopy | 7 | 2016-03-09 |
| 27 | 7ABG|1|5 | U5 spliceosomal RNA | U5 snRNA, MINX M3 pre-mRNA | Homo sapiens | Eukarya | RF00020 | Human pre-Bact-1 spliceosome | Electron microscopy | 7.8 | 2020-12-23 |
| 28 | 7ABI|1|5 | U5 spliceosomal RNA | U5 snRNA, MINX M3 pre-mRNA | Homo sapiens | Eukarya | RF00020 | Human pre-Bact-2 spliceosome | Electron microscopy | 8 | 2021-02-10 |
Release history
| Release | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 | 3.281 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 | 2023-05-03 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_73286.16 | NR_20.0_73286.15 | 3.236 | (25) 7ABG|1|5, 5MQF|1|5, 6ICZ|1|B, 6FF7|1|5, 3JCR|1|H, 7ABF|1|5, 6FF4|1|5, 7AAV|1|5, 6AHD|1|B, 7A5P|1|5, 6AH0|1|B, 6ZYM|1|5, 5Z58|1|B, 6QX9|1|5, 5Z57|1|B, 6QW6|1|5, 5Z56|1|B, 6QDV|1|5, 5YZG|1|B, 6ID1|1|B, 5XJC|1|B, 7DVQ|1|B, 6ID0|1|B, 5O9Z|1|5, 7ABI|1|5 | (3) 7W5B|1|B, 7W5A|1|B, 7W59|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_20.0_73286.16 | NR_20.0_73286.17 | 3.282 | (28) 5O9Z|1|5, 6FF4|1|5, 6ZYM|1|5, 7W5A|1|B, 6AHD|1|B, 6QX9|1|5, 7W59|1|B, 5MQF|1|5, 6AH0|1|B, 6QW6|1|5, 7DVQ|1|B, 3JCR|1|H, 5Z58|1|B, 6QDV|1|5, 7ABI|1|5, 5Z57|1|B, 6ID1|1|B, 7ABG|1|5, 5Z56|1|B, 6ID0|1|B, 7ABF|1|5, 5YZG|1|B, 6ICZ|1|B, 7AAV|1|5, 5XJC|1|B, 6FF7|1|5, 7A5P|1|5, 7W5B|1|B | (0) | (2) 8CH6|1|e, 7QTT|1|e |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6AHD|1|B | The Cryo-EM Structure of Human Pre-catalytic Spliceosome (B complex) at 3.8 angstrom resolution | ELECTRON MICROSCOPY | 3.8 | 115 |
| 2 | 6AH0|1|B | The Cryo-EM Structure of the Precusor of Human Pre-catalytic Spliceosome (pre-B complex) | ELECTRON MICROSCOPY | 5.7 | 115 |
| 3 | 5O9Z|1|5 | Cryo-EM structure of a pre-catalytic human spliceosome primed for activation (B complex) | ELECTRON MICROSCOPY | 4.5 | 114 |
| 4 | 5MQF|1|5 | Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex) | ELECTRON MICROSCOPY | 5.9 | 114 |
| 5 | 7A5P|1|5 | Human C Complex Spliceosome - Medium-resolution PERIPHERY | ELECTRON MICROSCOPY | 5 | 40 |
| 6 | 7ABI|1|5 | Human pre-Bact-2 spliceosome | ELECTRON MICROSCOPY | 8 | 114 |
| 7 | 7ABG|1|5 | Human pre-Bact-1 spliceosome | ELECTRON MICROSCOPY | 7.8 | 114 |
| 8 | 7ABF|1|5 | Human pre-Bact-1 spliceosome core structure | ELECTRON MICROSCOPY | 3.9 | 58 |
| 9 | 7AAV|1|5 | Human pre-Bact-2 spliceosome core structure | ELECTRON MICROSCOPY | 4.2 | 69 |
| 10 | 6FF7|1|5 | human Bact spliceosome core structure | ELECTRON MICROSCOPY | 4.5 | 70 |
| 11 | 6FF4|1|5 | human Bact spliceosome core structure | ELECTRON MICROSCOPY | 3.4 | 70 |
| 12 | 6ZYM|1|5 | Human C Complex Spliceosome - High-resolution CORE | ELECTRON MICROSCOPY | 3.4 | 74 |
| 13 | 6QDV|1|5 | Human post-catalytic P complex spliceosome | ELECTRON MICROSCOPY | 3.3 | 75 |
| 14 | 7DVQ|1|B | Cryo-EM Structure of the Activated Human Minor Spliceosome (minor Bact Complex) | ELECTRON MICROSCOPY | 2.89 | 90 |
| 15 | 6QX9|1|5 | Structure of a human fully-assembled precatalytic spliceosome (pre-B complex). | ELECTRON MICROSCOPY | 3.28 | 104 |
| 16 | 6QW6|1|5 | Structure of the human U5.U4/U6 tri-snRNP at 2.9A resolution. | ELECTRON MICROSCOPY | 2.92 | 104 |
| 17 | 7W59|1|B | The cryo-EM structure of human pre-C*-I complex | ELECTRON MICROSCOPY | 3.6 | 84 |
| 18 | 7W5A|1|B | The cryo-EM structure of human pre-C*-II complex | ELECTRON MICROSCOPY | 3.6 | 84 |
| 19 | 7W5B|1|B | The cryo-EM structure of human C* complex | ELECTRON MICROSCOPY | 4.3 | 84 |
| 20 | 6ID0|1|B | Cryo-EM structure of a human intron lariat spliceosome prior to Prp43 loaded (ILS1 complex) at 2.9 angstrom resolution | ELECTRON MICROSCOPY | 2.9 | 98 |
| 21 | 6ID1|1|B | Cryo-EM structure of a human intron lariat spliceosome after Prp43 loaded (ILS2 complex) at 2.9 angstrom resolution | ELECTRON MICROSCOPY | 2.86 | 98 |
| 22 | 6ICZ|1|B | Cryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstrom | ELECTRON MICROSCOPY | 3 | 97 |
| 23 | 5XJC|1|B | Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom | ELECTRON MICROSCOPY | 3.6 | 84 |
| 24 | 5YZG|1|B | The Cryo-EM Structure of Human Catalytic Step I Spliceosome (C complex) at 4.1 angstrom resolution | ELECTRON MICROSCOPY | 4.1 | 84 |
| 25 | 5Z57|1|B | Cryo-EM structure of the human activated spliceosome (late Bact) at 6.5 angstrom | ELECTRON MICROSCOPY | 6.5 | 84 |
| 26 | 5Z56|1|B | cryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom. | ELECTRON MICROSCOPY | 5.1 | 84 |
| 27 | 5Z58|1|B | Cryo-EM structure of a human activated spliceosome (early Bact) at 4.9 angstrom. | ELECTRON MICROSCOPY | 4.9 | 84 |
| 28 | 3JCR|1|H | 3D structure determination of the human*U4/U6.U5* tri-snRNP complex | ELECTRON MICROSCOPY | 7 | 63 |
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