Equivalence class NR_20.0_73286.5 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5XJC|1|B (rep) | U5 spliceosomal RNA | U5 snRNA, pre-mRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom | Electron microscopy | 3.6 | 2017-07-05 |
| 2 | 5YZG|1|B | U5 spliceosomal RNA | U5 snRNA, Pre-mRNA | Homo sapiens | Eukarya | RF00020 | The Cryo-EM Structure of Human Catalytic Step I Spliceosome (C complex) at 4.1 angstrom resolution | Electron microscopy | 4.1 | 2018-08-08 |
| 3 | 5O9Z|1|5 | U5 spliceosomal RNA | Homo sapiens U5 A small nuclear RNA, MINX pre-mRNA | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of a pre-catalytic human spliceosome primed for activation (B complex) | Electron microscopy | 4.5 | 2017-08-16 |
| 4 | 5MQF|1|5 | U5 spliceosomal RNA | Homo sapiens U5 A small nuclear RNA, MINX pre-mRNA (intron) | Homo sapiens | Eukarya | RF00020 | Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex) | Electron microscopy | 5.9 | 2017-03-22 |
| 5 | 3JCR|1|H | U5 spliceosomal RNA | U5 snRNA | Homo sapiens | Eukarya | RF00020 | 3D structure determination of the human*U4/U6.U5* tri-snRNP complex | Electron microscopy | 7 | 2016-03-09 |
| 6 | 6FF4|1|5 | U5 spliceosomal RNA | U5 snRNA, U2 snRNA, pre mRNA | Homo sapiens | Eukarya | RF00020 | human Bact spliceosome core structure | Electron microscopy | 3.4 | 2018-08-29 |
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5XJC|1|B | Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom | ELECTRON MICROSCOPY | 3.6 | 84 |
| 2 | 5YZG|1|B | The Cryo-EM Structure of Human Catalytic Step I Spliceosome (C complex) at 4.1 angstrom resolution | ELECTRON MICROSCOPY | 4.1 | 84 |
| 3 | 6FF4|1|5 | human Bact spliceosome core structure | ELECTRON MICROSCOPY | 3.4 | 70 |
| 4 | 5MQF|1|5 | Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex) | ELECTRON MICROSCOPY | 5.9 | 114 |
| 5 | 5O9Z|1|5 | Cryo-EM structure of a pre-catalytic human spliceosome primed for activation (B complex) | ELECTRON MICROSCOPY | 4.5 | 114 |
| 6 | 3JCR|1|H | 3D structure determination of the human*U4/U6.U5* tri-snRNP complex | ELECTRON MICROSCOPY | 7 | 63 |