Equivalence class NR_20.0_73426.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6QX9|1|2 (rep) | U2 splicesomal small nuclear RNA | U2 snRNA, U6 snRNA, AdML pre-mRNA | Homo sapiens | Eukarya | RF00004 | Structure of a human fully-assembled precatalytic spliceosome (pre-B complex). | Electron microscopy | 3.28 | 2019-04-17 |
| 2 | 6Y50|1|2 | U2 splicesomal small nuclear RNA | U2 snRNA | Homo sapiens | Eukarya | RF00004 | 5'domain of human 17S U2 snRNP | Electron microscopy | 4.1 | 2020-07-01 |
| 3 | 7ABH|1|2 | U2 splicesomal small nuclear RNA | U2 snRNA, MINX M3 pre-mRNA | Homo sapiens | Eukarya | RF00004 | Human pre-Bact-2 spliceosome (SF3b/U2 snRNP portion) | Electron microscopy | 4.5 | 2020-12-09 |
| 4 | 5Z58|1|H+ 5Z58|1|F | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | U2 snRNA, U6 snRNA, pre-mRNA | Homo sapiens | Eukarya | RF00004 + RF00026 | Cryo-EM structure of a human activated spliceosome (early Bact) at 4.9 angstrom. | Electron microscopy | 4.9 | 2018-09-19 |
| 5 | 5MQF|1|2+ 5MQF|1|6 | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | Human gene for small nuclear RNA U2 (snRNA U2), Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA, MINX pre-mRNA (intron) | Homo sapiens | Eukarya | RF00004 + RF00026 | Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex) | Electron microscopy | 5.9 | 2017-03-22 |
| 6 | 5Z56|1|H+ 5Z56|1|F | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | U2 snRNA, U6 snRNA, pre-mRNA | Homo sapiens | Eukarya | RF00004 + RF00026 | cryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom. | Electron microscopy | 5.1 | 2018-09-19 |
| 7 | 6Y5Q|1|2 | U2 splicesomal small nuclear RNA | U2snRNA | Homo sapiens | Eukarya | RF00004 | human 17S U2 snRNP | Electron microscopy | 7.1 | 2020-06-17 |
| 8 | 6Y53|1|2 | U2 splicesomal small nuclear RNA | U2 snRNA | Homo sapiens | Eukarya | RF00004 | human 17S U2 snRNP low resolution part | Electron microscopy | 7.1 | 2020-06-17 |
| 9 | 5Z57|1|H+ 5Z57|1|F | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | U2 snRNA, U6 snRNA, pre-mRNA | Homo sapiens | Eukarya | RF00004 + RF00026 | Cryo-EM structure of the human activated spliceosome (late Bact) at 6.5 angstrom | Electron microscopy | 6.5 | 2018-09-19 |
| 10 | 7ABI|1|2+ 7ABI|1|6 | U2 splicesomal small nuclear RNA + U6 spliceosomal RNA | U2 snRNA, U6 snRNA, MINX M3 pre-mRNA | Homo sapiens | Eukarya | RF00004 + RF00026 | Human pre-Bact-2 spliceosome | Electron microscopy | 8 | 2021-02-10 |
Release history
| Release | 3.165 | 3.166 | 3.167 | 3.168 | 3.169 | 3.170 | 3.171 | 3.172 | 3.173 | 3.174 | 3.175 | 3.176 | 3.177 | 3.178 | 3.179 | 3.180 | 3.181 | 3.182 | 3.183 | 3.184 | 3.185 | 3.186 | 3.187 | 3.188 | 3.189 | 3.190 | 3.191 | 3.192 | 3.193 | 3.194 | 3.195 | 3.196 | 3.197 | 3.198 | 3.199 | 3.200 | 3.201 | 3.202 | 3.203 | 3.204 | 3.205 | 3.206 | 3.207 | 3.208 | 3.209 | 3.210 | 3.211 | 3.212 | 3.213 | 3.214 | 3.215 | 3.216 | 3.217 | 3.218 | 3.219 | 3.220 | 3.221 | 3.222 | 3.223 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2021-02-10 | 2021-02-17 | 2021-02-24 | 2021-03-03 | 2021-03-10 | 2021-03-17 | 2021-03-24 | 2021-03-31 | 2021-04-07 | 2021-04-14 | 2021-04-21 | 2021-04-28 | 2021-05-05 | 2021-05-12 | 2021-05-19 | 2021-05-26 | 2021-06-02 | 2021-06-09 | 2021-06-16 | 2021-06-23 | 2021-06-30 | 2021-07-07 | 2021-07-14 | 2021-07-21 | 2021-07-28 | 2021-08-04 | 2021-08-11 | 2021-08-18 | 2021-08-25 | 2021-09-01 | 2021-09-08 | 2021-09-15 | 2021-09-22 | 2021-09-29 | 2021-10-06 | 2021-10-13 | 2021-10-20 | 2021-10-27 | 2021-11-03 | 2021-11-10 | 2021-11-17 | 2021-11-24 | 2021-12-01 | 2021-12-08 | 2021-12-15 | 2021-12-22 | 2021-12-29 | 2022-01-05 | 2022-01-12 | 2022-01-19 | 2022-01-26 | 2022-02-02 | 2022-02-09 | 2022-02-16 | 2022-02-23 | 2022-03-02 | 2022-03-09 | 2022-03-16 | 2022-03-23 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_73426.1 | NR_20.0_14002.1 | 3.165 | (5) 5Z58|1|H+5Z58|1|F, 5Z57|1|H+5Z57|1|F, 5Z56|1|H+5Z56|1|F, 7ABH|1|2, 6QX9|1|2 | (5) 6Y53|1|2, 6Y50|1|2, 5MQF|1|2+5MQF|1|6, 7ABI|1|2+7ABI|1|6, 6Y5Q|1|2 | (0) |
| NR_20.0_73426.1 | NR_20.0_98608.2 | 3.165 | (4) 6Y5Q|1|2, 6Y53|1|2, 6Y50|1|2, 5MQF|1|2+5MQF|1|6 | (6) 5Z57|1|H+5Z57|1|F, 5Z56|1|H+5Z56|1|F, 7ABI|1|2+7ABI|1|6, 7ABH|1|2, 6QX9|1|2, 5Z58|1|H+5Z58|1|F | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_20.0_73426.1 | NR_20.0_73426.2 | 3.224 | (10) 5MQF|1|2+5MQF|1|6, 6Y50|1|2, 6QX9|1|2, 7ABI|1|2+7ABI|1|6, 5Z58|1|H+5Z58|1|F, 7ABH|1|2, 5Z57|1|H+5Z57|1|F, 6Y5Q|1|2, 5Z56|1|H+5Z56|1|F, 6Y53|1|2 | (0) | (3) 7Q3L|1|2, 7Q4O|1|2+7Q4O|1|h, 7Q4P|1|2 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6Y50|1|2 | 5'domain of human 17S U2 snRNP | ELECTRON MICROSCOPY | 4.1 | 50 |
| 2 | 6Y5Q|1|2 | human 17S U2 snRNP | ELECTRON MICROSCOPY | 7.1 | 148 |
| 3 | 6Y53|1|2 | human 17S U2 snRNP low resolution part | ELECTRON MICROSCOPY | 7.1 | 98 |
| 4 | 6QX9|1|2 | Structure of a human fully-assembled precatalytic spliceosome (pre-B complex). | ELECTRON MICROSCOPY | 3.28 | 94 |
| 5 | 7ABH|1|2 | Human pre-Bact-2 spliceosome (SF3b/U2 snRNP portion) | ELECTRON MICROSCOPY | 4.5 | 37 |
| 6 | 5Z56|1|H+5Z56|1|F | cryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom. | ELECTRON MICROSCOPY | 5.1 | 136 |
| 7 | 5Z57|1|H+5Z57|1|F | Cryo-EM structure of the human activated spliceosome (late Bact) at 6.5 angstrom | ELECTRON MICROSCOPY | 6.5 | 136 |
| 8 | 5Z58|1|H+5Z58|1|F | Cryo-EM structure of a human activated spliceosome (early Bact) at 4.9 angstrom. | ELECTRON MICROSCOPY | 4.9 | 136 |
| 9 | 7ABI|1|2+7ABI|1|6 | Human pre-Bact-2 spliceosome | ELECTRON MICROSCOPY | 8 | 164 |
| 10 | 5MQF|1|2+5MQF|1|6 | Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex) | ELECTRON MICROSCOPY | 5.9 | 140 |