NR_20.0_73827.3

Members (15)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	4NLF\|1\|A (rep)		23S ribosomal RNA Sarcin Ricin Loop				2'-trifluoromethylthio-2'-deoxycytidine-modified SRL	X-ray diffraction	1	2014-11-19
2	480D\|1\|A		SARCIN/RICIN DOMAIN FROM 23 S RRNA				CRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNA	X-ray diffraction	1.5	1999-10-08
3	4Y27\|1\|A		27-mer 23S Sarcin-Ricil Loop	Escherichia coli			E.coli 23S Sarcin-Ricil Loop, modified with a 2-Me on G2661 and a methylphosphonate on A2662	X-ray diffraction	1	2015-11-18
4	3DW4\|1\|A		Sarcin/Ricin Domain from E. Coli 23 S rRNA				Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-OCH3 modified	X-ray diffraction	0.97	2009-03-24
5	1MSY\|1\|A		SARCIN/RICIN DOMAIN FROM 23 S RRNA				GUAA tetraloop mutant of Sarcin/Ricin domain from E. Coli 23 S rRNA	X-ray diffraction	1.41	2003-02-25
6	3DW6\|1\|A		Sarcin/Ricin Domain from E. Coli 23 S rRNA				Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-SECH3 modified	X-ray diffraction	1	2009-03-24
7	3DVZ\|1\|A		Sarcin/Ricin Domain from E. Coli 23 S rRNA				Crystal Structure of the Sarcin/Ricin Domain from E. coli 23 S rRNA	X-ray diffraction	1	2009-03-24
8	3S7C\|1\|A		Ecoli 23 S rRNA Sarcin Ricin loop				Crystal structure of a 2'-azido-uridine-modified RNA	X-ray diffraction	1.1	2012-04-11
9	4NXH\|1\|A		23S ribosomal RNA Sarcin Ricin Loop	Escherichia coli			2'-Trifluoromethylthiouridine-modified E. coli 23S rRNA Sarcin Ricin Loop	X-ray diffraction	1.16	2014-12-10
10	3S8U\|1\|A		Ecoli 23 S rRNA Sarcin Ricin loop	Escherichia coli			Crystal structure of a 2-azido-adenine-modified RNA	X-ray diffraction	1.2	2012-04-11
11	1Q9A\|1\|A		Sarcin/ricin 23S rRNA				Crystal structure of the sarcin/ricin domain from E.coli 23S rRNA at 1.04 resolution	X-ray diffraction	1.04	2003-11-25
12	483D\|1\|A		SARCIN/RICIN RRNA DOMAIN				CRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNA	X-ray diffraction	1.11	1999-10-08
13	3DW5\|1\|A		Sarcin/Ricin Domain from E. Coli 23 S rRNA				Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23S rRNA, U2656-OCH3 modified	X-ray diffraction	0.96	2009-03-24
14	4NMG\|1\|A		23S ribosomal RNA Sarcin Ricin Loop				2'-Trifluoromethylthio-2'-deoxyuridine-modified SRL	X-ray diffraction	1.01	2014-11-19
15	3DW7\|1\|A		Sarcin/Ricin Domain from E. Coli 23 S rRNA				Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2656-SeCH3 modified	X-ray diffraction	1	2009-03-24

Release history

Release	2.50	2.51	2.52	2.53	2.54	2.55	2.56	2.57	2.58	2.59	2.60	2.61	2.62	2.63	2.64	2.65	2.66	2.67	2.68	2.69	2.70
Date	2015-11-20	2015-11-27	2015-12-04	2015-12-11	2015-12-18	2015-12-25	2016-01-01	2016-01-08	2016-01-15	2016-01-22	2016-01-29	2016-02-05	2016-02-12	2016-02-19	2016-02-26	2016-03-04	2016-03-11	2016-03-18	2016-03-25	2016-04-01	2016-04-08

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_20.0_73827.3	NR_all_73827.2	2.50	(14) 4NXH\|1\|A, 4NMG\|1\|A, 4NLF\|1\|A, 483D\|1\|A, 480D\|1\|A, 3S8U\|1\|A, 3S7C\|1\|A, 3DW7\|1\|A, 3DW6\|1\|A, 3DW5\|1\|A, 3DW4\|1\|A, 3DVZ\|1\|A, 1Q9A\|1\|A, 1MSY\|1\|A	(1) 4Y27\|1\|A	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	4NLF\|1\|A	2'-trifluoromethylthio-2'-deoxycytidine-modified SRL	X-RAY DIFFRACTION	1	28
2	480D\|1\|A	CRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNA	X-RAY DIFFRACTION	1.5	27
3	4Y27\|1\|A	E.coli 23S Sarcin-Ricil Loop, modified with a 2-Me on G2661 and a methylphosphonate on A2662	X-RAY DIFFRACTION	1	25
4	3DW4\|1\|A	Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-OCH3 modified	X-RAY DIFFRACTION	0.97	26
5	3DW6\|1\|A	Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-SECH3 modified	X-RAY DIFFRACTION	1	28
6	3S7C\|1\|A	Crystal structure of a 2'-azido-uridine-modified RNA	X-RAY DIFFRACTION	1.1	32
7	4NXH\|1\|A	2'-Trifluoromethylthiouridine-modified E. coli 23S rRNA Sarcin Ricin Loop	X-RAY DIFFRACTION	1.16	32
8	4NMG\|1\|A	2'-Trifluoromethylthio-2'-deoxyuridine-modified SRL	X-RAY DIFFRACTION	1.01	36
9	3DW7\|1\|A	Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2656-SeCH3 modified	X-RAY DIFFRACTION	1	37
10	3DW5\|1\|A	Crystal Structure of the Sarcin/Ricin Domain from E. COLI 23S rRNA, U2656-OCH3 modified	X-RAY DIFFRACTION	0.96	32
11	3DVZ\|1\|A	Crystal Structure of the Sarcin/Ricin Domain from E. coli 23 S rRNA	X-RAY DIFFRACTION	1	35
12	3S8U\|1\|A	Crystal structure of a 2-azido-adenine-modified RNA	X-RAY DIFFRACTION	1.2	34
13	1Q9A\|1\|A	Crystal structure of the sarcin/ricin domain from E.coli 23S rRNA at 1.04 resolution	X-RAY DIFFRACTION	1.04	38
14	483D\|1\|A	CRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNA	X-RAY DIFFRACTION	1.11	39
15	1MSY\|1\|A	GUAA tetraloop mutant of Sarcin/Ricin domain from E. Coli 23 S rRNA	X-RAY DIFFRACTION	1.41	31

Coloring options: Nucleotide numbers

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