NR_20.0_76703.8

Members (31)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	5E81\|1\|1K (rep)	Transfer RNA	tRNA-Lys, mRNA	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair	X-ray diffraction	2.95	2016-01-27
2	5EL6\|1\|1L	Transfer RNA	tRNALys, mRNA	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin	X-ray diffraction	3.1	2016-01-27
3	5EL4\|1\|1K	Transfer RNA	tRNA-Lys, mRNA	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position	X-ray diffraction	3.15	2016-01-27
4	5IB8\|1\|1K	Transfer RNA	tRNALys, mRNA	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site	X-ray diffraction	3.13	2016-05-25
5	5IB7\|1\|1K	Transfer RNA	tRNALys, mRNA	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin	X-ray diffraction	2.99	2016-05-25
6	5E7K\|1\|1K	Transfer RNA	tRNALys, mRNA	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site	X-ray diffraction	3.2	2016-01-27
7	5EL4\|1\|1L	Transfer RNA	tRNA-Lys, mRNA	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position	X-ray diffraction	3.15	2016-01-27
8	5EL6\|1\|1K	Transfer RNA	tRNALys, mRNA	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin	X-ray diffraction	3.1	2016-01-27
9	5EL7\|1\|1K	Transfer RNA	tRNALys, mRNA	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin	X-ray diffraction	3.15	2016-01-27
10	5E81\|1\|1L	Transfer RNA	tRNA-Lys, mRNA	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair	X-ray diffraction	2.95	2016-01-27
11	5IB7\|1\|1L	Transfer RNA	tRNALys, mRNA	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin	X-ray diffraction	2.99	2016-05-25
12	5E7K\|1\|1L	Transfer RNA	tRNALys, mRNA	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site	X-ray diffraction	3.2	2016-01-27
13	5EL7\|1\|1L	Transfer RNA	tRNALys, mRNA	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin	X-ray diffraction	3.15	2016-01-27
14	5EL5\|1\|1K	Transfer RNA	tRNALys, mRNA	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position	X-ray diffraction	3.15	2016-01-27
15	5EL5\|1\|1L	Transfer RNA	tRNALys, mRNA	Escherichia coli	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position	X-ray diffraction	3.15	2016-01-27
16	7N1P\|1\|Pt	Transfer RNA	tRNA, mRNA	Escherichia coli K-12	Bacteria	RF00005	Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation	Electron microscopy	2.33	2021-07-14
17	7N2U\|1\|Pt	Transfer RNA	tRNA, mRNA	Escherichia coli K-12	Bacteria	RF00005	Elongating 70S ribosome complex in a hybrid-H1 pre-translocation (PRE-H1) conformation	Electron microscopy	2.53	2021-07-14
18	7N30\|1\|Pt	Transfer RNA	tRNA, mRNA	Escherichia coli K-12	Bacteria	RF00005	Elongating 70S ribosome complex in a hybrid-H2* pre-translocation (PRE-H2*) conformation	Electron microscopy	2.66	2021-07-14
19	7N31\|1\|Pt	Transfer RNA	tRNA, mRNA	Escherichia coli K-12	Bacteria	RF00005	Elongating 70S ribosome complex in a post-translocation (POST) conformation	Electron microscopy	2.69	2021-07-14
20	7N2C\|1\|Pt	Transfer RNA	Chains: Pt, Chains: mR	Escherichia coli	Bacteria	RF00005	Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)	Electron microscopy	2.72	2021-07-14
21	7ZTA\|1\|PTR1	Transfer RNA	tRNA-Lys, mRNA	Escherichia coli K-12	Bacteria	RF00005	Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide	Electron microscopy	2.7	2023-04-12
22	7D6Z\|1\|4	Transfer RNA	A-site tRNA	Escherichia coli	Bacteria	RF00005	Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor	Electron microscopy	3.4	2021-04-07
23	8FON\|1\|QV	Transfer RNA	P-site tRNA^Lys(SUU), mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site	X-ray diffraction	3.64	2023-03-29
24	8FON\|1\|XV	Transfer RNA	P-site tRNA^Lys(SUU), A-site ASL^Phe, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site	X-ray diffraction	3.64	2023-03-29
25	5UYQ\|1\|Y	Transfer RNA	tRNALys, mRNA	Escherichia coli	Bacteria	RF00005	70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)	Electron microscopy	3.8	2017-06-07
26	5JTE\|1\|AW	Transfer RNA	A-site Lysine tRNA Lysine, mRNA	Escherichia coli	Bacteria	RF00005	Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA	Electron microscopy	3.6	2016-07-20
27	8FOM\|1\|QV	Transfer RNA	P-site tRNA^Lys(SUU), mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site	X-ray diffraction	3.58	2023-03-29
28	8FOM\|1\|XV	Transfer RNA	P-site tRNA^Lys(SUU), mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site	X-ray diffraction	3.58	2023-03-29
29	5UYP\|1\|Y	Transfer RNA	tRNALys	Escherichia coli	Bacteria	RF00005	70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)	Electron microscopy	3.9	2017-06-07
30	5UYN\|1\|Y	Transfer RNA	tRNALys	Escherichia coli	Bacteria	RF00005	70S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc)	Electron microscopy	4	2017-06-07
31	7D80\|1\|Z	Transfer RNA	A-site tRNA	Escherichia coli	Bacteria	RF00005	Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase	Electron microscopy	4.1	2021-04-07

Release history

Release	3.278	3.279	3.280	3.281	3.282	3.283	3.284	3.285	3.286	3.287	3.288	3.289	3.290	3.291	3.292	3.293	3.294	3.295
Date	2023-04-12	2023-04-19	2023-04-26	2023-05-03	2023-05-10	2023-05-17	2023-05-24	2023-05-31	2023-06-07	2023-06-14	2023-06-21	2023-06-28	2023-07-05	2023-07-12	2023-07-19	2023-07-26	2023-08-02	2023-08-09

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_20.0_76703.8	NR_20.0_76703.7	3.278	(30) 7N2C\|1\|Pt, 7N1P\|1\|Pt, 7D80\|1\|Z, 7D6Z\|1\|4, 5UYQ\|1\|Y, 5UYP\|1\|Y, 5UYN\|1\|Y, 5JTE\|1\|AW, 5IB8\|1\|1K, 5IB7\|1\|1L, 5IB7\|1\|1K, 5EL7\|1\|1L, 5EL7\|1\|1K, 5EL6\|1\|1L, 5EL6\|1\|1K, 5EL5\|1\|1L, 5EL5\|1\|1K, 5EL4\|1\|1L, 5EL4\|1\|1K, 5E81\|1\|1L, 5E81\|1\|1K, 5E7K\|1\|1L, 5E7K\|1\|1K, 8FON\|1\|XV, 8FON\|1\|QV, 8FOM\|1\|XV, 8FOM\|1\|QV, 7N31\|1\|Pt, 7N30\|1\|Pt, 7N2U\|1\|Pt	(1) 7ZTA\|1\|PTR1	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_20.0_76703.8	NR_20.0_76703.9	3.296	(31) 7D80\|1\|Z, 5E7K\|1\|1K, 7N30\|1\|Pt, 5EL4\|1\|1K, 8FOM\|1\|XV, 5EL6\|1\|1K, 5IB7\|1\|1K, 5UYN\|1\|Y, 7N2U\|1\|Pt, 5E81\|1\|1L, 8FOM\|1\|QV, 5EL5\|1\|1L, 5EL7\|1\|1L, 5JTE\|1\|AW, 7D6Z\|1\|4, 7N2C\|1\|Pt, 5E81\|1\|1K, 7ZTA\|1\|PTR1, 5EL5\|1\|1K, 8FON\|1\|XV, 5EL7\|1\|1K, 5IB8\|1\|1K, 5UYQ\|1\|Y, 7N1P\|1\|Pt, 5E7K\|1\|1L, 7N31\|1\|Pt, 5EL4\|1\|1L, 8FON\|1\|QV, 5EL6\|1\|1L, 5IB7\|1\|1L, 5UYP\|1\|Y	(0)	(4) 8BH4\|1\|5, 8BF7\|1\|5, 8BHN\|1\|5, 8BHJ\|1\|5

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	7D80\|1\|Z	Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase	ELECTRON MICROSCOPY	4.1	66
2	7D6Z\|1\|4	Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor	ELECTRON MICROSCOPY	3.4	66
3	5JTE\|1\|AW	Cryo-EM structure of an ErmBL-stalled ribosome in complex with A-, P-, and E-tRNA	ELECTRON MICROSCOPY	3.6	66
4	7N1P\|1\|Pt	Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation	ELECTRON MICROSCOPY	2.33	67
5	7N30\|1\|Pt	Elongating 70S ribosome complex in a hybrid-H2* pre-translocation (PRE-H2*) conformation	ELECTRON MICROSCOPY	2.66	66
6	7N2U\|1\|Pt	Elongating 70S ribosome complex in a hybrid-H1 pre-translocation (PRE-H1) conformation	ELECTRON MICROSCOPY	2.53	67
7	7N2C\|1\|Pt	Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)	ELECTRON MICROSCOPY	2.72	67
8	7N31\|1\|Pt	Elongating 70S ribosome complex in a post-translocation (POST) conformation	ELECTRON MICROSCOPY	2.69	67
9	8FOM\|1\|QV	Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site	X-RAY DIFFRACTION	3.58	66
10	8FOM\|1\|XV	Crystal structure of tRNA^Lys(SUU) bound to UAA codon in the ribosomal P site	X-RAY DIFFRACTION	3.58	66
11	8FON\|1\|XV	Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site	X-RAY DIFFRACTION	3.64	72
12	8FON\|1\|QV	Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site	X-RAY DIFFRACTION	3.64	72
13	7ZTA\|1\|PTR1	Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide	ELECTRON MICROSCOPY	2.7	66
14	5IB7\|1\|1L	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin	X-RAY DIFFRACTION	2.99	66
15	5E81\|1\|1L	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair	X-RAY DIFFRACTION	2.95	64
16	5E7K\|1\|1L	Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site	X-RAY DIFFRACTION	3.2	68
17	5EL6\|1\|1L	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin	X-RAY DIFFRACTION	3.1	68
18	5EL7\|1\|1L	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin	X-RAY DIFFRACTION	3.15	68
19	5EL4\|1\|1L	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position	X-RAY DIFFRACTION	3.15	72
20	5EL6\|1\|1K	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin	X-RAY DIFFRACTION	3.1	64
21	5EL4\|1\|1K	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position	X-RAY DIFFRACTION	3.15	64
22	5E7K\|1\|1K	Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site	X-RAY DIFFRACTION	3.2	66
23	5IB8\|1\|1K	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site	X-RAY DIFFRACTION	3.13	66
24	5E81\|1\|1K	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair	X-RAY DIFFRACTION	2.95	67
25	5IB7\|1\|1K	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin	X-RAY DIFFRACTION	2.99	67
26	5EL7\|1\|1K	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position and antibiotic paromomycin	X-RAY DIFFRACTION	3.15	64
27	5EL5\|1\|1K	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position	X-RAY DIFFRACTION	3.15	64
28	5EL5\|1\|1L	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the second position	X-RAY DIFFRACTION	3.15	71
29	5UYN\|1\|Y	70S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc)	ELECTRON MICROSCOPY	4	75
30	5UYP\|1\|Y	70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)	ELECTRON MICROSCOPY	3.9	75
31	5UYQ\|1\|Y	70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)	ELECTRON MICROSCOPY	3.8	75

Equivalence class NR_20.0_76703.8 Obsolete

Release history

Parents

Children