Equivalence class NR_20.0_78233.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4V9K|1|AW (rep) | Transfer RNA | transfer RNA | Escherichia coli | Bacteria | RF00005 | 70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state. | X-ray diffraction | 3.5 | 2014-07-09 |
| 2 | 4V9K|1|CW | Transfer RNA | transfer RNA | Escherichia coli | Bacteria | RF00005 | 70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state. | X-ray diffraction | 3.5 | 2014-07-09 |
| 3 | 4V9M|1|CW | Transfer RNA | messenger RNA, transfer RNA | Escherichia coli | Bacteria | RF00005 | 70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state. | X-ray diffraction | 4 | 2014-07-09 |
| 4 | 4V9M|1|AW | Transfer RNA | messenger RNA, transfer RNA | Escherichia coli | Bacteria | RF00005 | 70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state. | X-ray diffraction | 4 | 2014-07-09 |
| 5 | 4V9L|1|AW | Transfer RNA | messenger RNA, transfer RNA | Escherichia coli | Bacteria | RF00005 | 70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state. | X-ray diffraction | 3.5 | 2014-07-09 |
| 6 | 4V9L|1|CW | Transfer RNA | transfer RNA | Escherichia coli | Bacteria | RF00005 | 70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state. | X-ray diffraction | 3.5 | 2014-07-09 |
| 7 | 4W29|1|AW | Transfer RNA | mRNA, tRNA | Escherichia coli | Bacteria | RF00005 | 70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state. | X-ray diffraction | 3.8 | 2014-10-01 |
| 8 | 4W29|1|CW | Transfer RNA | mRNA, tRNA | Escherichia coli | Bacteria | RF00005 | 70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state. | X-ray diffraction | 3.8 | 2014-10-01 |
| 9 | 4V9J|1|AW | Transfer RNA | messenger RNA, tRNA-Met | Escherichia coli | Bacteria | RF00005 | 70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state. | X-ray diffraction | 3.86 | 2014-07-09 |
| 10 | 4V9J|1|CW | Transfer RNA | messenger RNA, tRNA-Met | Escherichia coli | Bacteria | RF00005 | 70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state. | X-ray diffraction | 3.86 | 2014-07-09 |
| 11 | 6Q97|1|8 | Transfer RNA | tRNA-Met | Escherichia coli | Bacteria | RF00005 | Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome | Electron microscopy | 3.9 | 2019-03-13 |
| 12 | 4V7B|1|AW | Transfer RNA | formyl-methionine specific initiator transfer RNA, messenger RNA | Escherichia coli | Bacteria | RF00005 | Visualization of two tRNAs trapped in transit during EF-G-mediated translocation | Electron microscopy | 6.8 | 2014-07-09 |
Release history
| Release | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-03-15 | 2019-03-22 | 2019-03-29 | 2019-04-05 | 2019-04-12 | 2019-04-19 | 2019-04-26 | 2019-05-03 | 2019-05-10 | 2019-05-17 | 2019-05-24 | 2019-05-31 | 2019-06-07 | 2019-06-14 | 2019-06-21 | 2019-06-28 | 2019-07-05 | 2019-07-12 | 2019-07-19 | 2019-07-26 | 2019-08-02 | 2019-08-09 | 2019-08-16 | 2019-08-23 | 2019-08-28 | 2019-09-04 | 2019-09-11 | 2019-09-19 | 2019-09-25 | 2019-10-03 | 2019-10-09 | 2019-10-16 | 2019-10-23 | 2019-10-30 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_20.0_78233.2 | NR_20.0_78233.3 | 3.99 | (11) 4V7B|1|AW, 4V9J|1|AW, 4V9J|1|CW, 4V9K|1|AW, 4V9K|1|CW, 4V9L|1|AW, 4V9L|1|CW, 4V9M|1|AW, 4V9M|1|CW, 4W29|1|AW, 4W29|1|CW | (1) 6Q97|1|8 | (0) |
| NR_20.0_78233.2 | NR_20.0_80098.1 | 3.99 | (1) 6Q97|1|8 | (11) 4V7B|1|AW, 4V9J|1|AW, 4V9J|1|CW, 4V9K|1|AW, 4V9K|1|CW, 4V9L|1|AW, 4V9L|1|CW, 4V9M|1|AW, 4V9M|1|CW, 4W29|1|AW, 4W29|1|CW | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well.
| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4W29|1|AW | 70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state. | X-RAY DIFFRACTION | 3.8 | 77 |
| 2 | 4W29|1|CW | 70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state. | X-RAY DIFFRACTION | 3.8 | 77 |
| 3 | 4V7B|1|AW | Visualization of two tRNAs trapped in transit during EF-G-mediated translocation | ELECTRON MICROSCOPY | 6.8 | 77 |
| 4 | 4V9J|1|AW | 70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state. | X-RAY DIFFRACTION | 3.86 | 77 |
| 5 | 4V9J|1|CW | 70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state. | X-RAY DIFFRACTION | 3.86 | 77 |
| 6 | 4V9M|1|CW | 70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state. | X-RAY DIFFRACTION | 4 | 77 |
| 7 | 4V9L|1|CW | 70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state. | X-RAY DIFFRACTION | 3.5 | 77 |
| 8 | 4V9L|1|AW | 70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state. | X-RAY DIFFRACTION | 3.5 | 77 |
| 9 | 4V9M|1|AW | 70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state. | X-RAY DIFFRACTION | 4 | 77 |
| 10 | 4V9K|1|CW | 70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state. | X-RAY DIFFRACTION | 3.5 | 77 |
| 11 | 4V9K|1|AW | 70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state. | X-RAY DIFFRACTION | 3.5 | 77 |
| 12 | 6Q97|1|8 | Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome | ELECTRON MICROSCOPY | 3.9 | 77 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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