#IFECompound(s)RNA source organismTitleMethodResolutionDate
15AXM|1|P (rep)RNA (75-MER)Saccharomyces cerevisiaeCrystal structure of Thg1 like protein (TLP) with tRNA(Phe)X-RAY DIFFRACTION2.212016-08-03
21EVV|1|APHENYLALANINE TRANSFER RNASaccharomycesCRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRANSFER RNA AT 2.0 A RESOLUTIONX-RAY DIFFRACTION22000-05-01
35AXN|1|PRNA (75-MER)Saccharomyces cerevisiaeCrystal structure of Thg1 like protein (TLP) with tRNA(Phe) and GDPNPX-RAY DIFFRACTION2.72016-08-03
41OB2|1|BTRANSFER-RNA, PHESaccharomyces cerevisiaeE. coli elongation factor EF-Tu complexed with the antibiotic kirromycin, a GTP analog, and Phe-tRNAX-RAY DIFFRACTION3.352004-05-27
56LVR|1|Dyeast phenylalanine tRNASaccharomyces cerevisiaeCrystal structure of the PPR domain of Arabidopsis thaliana protein-only RNase P 1 (PRORP1) in complex with tRNAX-RAY DIFFRACTION2.852020-08-12
63WC2|1|P76mer-tRNACrystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG)X-RAY DIFFRACTION3.642013-12-18
76LVR|1|Byeast phenylalanine tRNASaccharomyces cerevisiaeCrystal structure of the PPR domain of Arabidopsis thaliana protein-only RNase P 1 (PRORP1) in complex with tRNAX-RAY DIFFRACTION2.852020-08-12
83WC2|1|Q76mer-tRNACrystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG)X-RAY DIFFRACTION3.642013-12-18
91SZ1|1|FT-RNA (76-MER)Mechanism of CCA-adding enzymes specificity revealed by crystal structures of ternary complexesX-RAY DIFFRACTION6.212004-08-10
101SZ1|1|ET-RNA (76-MER)Mechanism of CCA-adding enzymes specificity revealed by crystal structures of ternary complexesX-RAY DIFFRACTION6.212004-08-10
114TNA|1|ATRNAPHESaccharomyces cerevisiaeFURTHER REFINEMENT OF THE STRUCTURE OF YEAST T-RNA-PHEX-RAY DIFFRACTION2.51978-04-12
121EHZ|1|ATRANSFER RNA (PHE)Saccharomyces cerevisiaeThe crystal structure of yeast phenylalanine tRNA at 1.93 A resolutionX-RAY DIFFRACTION1.932000-10-02
136XZ7|1|gfMet-Phe-tRNA(Phe)Saccharomyces cerevisiaeE. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).ELECTRON MICROSCOPY2.12020-07-22
141I9V|1|APHENYLALANINE TRANSFER RNASaccharomyces cerevisiaeCRYSTAL STRUCTURE ANALYSIS OF A TRNA-NEOMYCIN COMPLEXX-RAY DIFFRACTION2.62001-06-04
156XZB|1|g2fMet-Phe-tRNA(Phe)E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).ELECTRON MICROSCOPY2.542020-11-04
166XIR|1|AZTransfer RNASaccharomyces cerevisiaeCryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative StressELECTRON MICROSCOPY3.22020-08-26
176XIR|1|AXTransfer RNASaccharomyces cerevisiaeCryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative StressELECTRON MICROSCOPY3.22020-08-26
186GZ5|1|BwE/E-site-tRNA, mRNASaccharomyces cerevisiaetRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)ELECTRON MICROSCOPY3.52018-12-05
191TN1|1|ATRNAPHESaccharomyces cerevisiaeCRYSTALLOGRAPHIC AND BIOCHEMICAL INVESTIGATION OF THE LEAD(II)-CATALYZED HYDROLYSIS OF YEAST PHENYLALANINE TRNAX-RAY DIFFRACTION31987-01-15
201TN2|1|ATRNAPHESaccharomyces cerevisiaeCRYSTALLOGRAPHIC AND BIOCHEMICAL INVESTIGATION OF THE LEAD(II)-CATALYZED HYDROLYSIS OF YEAST PHENYLALANINE T-RNAX-RAY DIFFRACTION31986-10-24
216GZ3|1|Bwpe/E-site-tRNA, mRNASaccharomyces cerevisiaetRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)ELECTRON MICROSCOPY3.62018-12-05
221TTT|1|FTRANSFER RIBONUCLEIC ACID (YEAST, PHE)Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-RAY DIFFRACTION2.71996-12-23
235M1J|1|A3yeast Phe-tRNA-Phe, nonstop mRNASaccharomyces cerevisiaeNonstop ribosomal complex bound with Dom34 and Hbs1ELECTRON MICROSCOPY3.32017-01-18
244TRA|1|ATRNAPHESaccharomyces cerevisiaeRESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALSX-RAY DIFFRACTION31987-11-06
256TNA|1|ATRNAPHESaccharomyces cerevisiaeCRYSTAL STRUCTURE OF YEAST PHENYLALANINE T-RNA. I.CRYSTALLOGRAPHIC REFINEMENTX-RAY DIFFRACTION2.71979-01-16
266GQV|1|AYTransfer RNA - Phe, Messenger RNASaccharomyces cerevisiaeCryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)ELECTRON MICROSCOPY42018-07-11
271TTT|1|DTRANSFER RIBONUCLEIC ACID (YEAST, PHE)Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-RAY DIFFRACTION2.71996-12-23
281TTT|1|ETRANSFER RIBONUCLEIC ACID (YEAST, PHE)Phe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-RAY DIFFRACTION2.71996-12-23
296GQB|1|AXTransfer RNA - Phe, Messenger RNASaccharomyces cerevisiaeCryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)ELECTRON MICROSCOPY3.92018-07-11
306XIQ|1|AXTransfer RNASaccharomyces cerevisiaeCryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative StressELECTRON MICROSCOPY4.22020-08-26
316XIQ|1|AZTransfer RNASaccharomyces cerevisiaeCryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative StressELECTRON MICROSCOPY4.22020-08-26
326GQ1|1|AXTransfer RNA - Phe, Messenger RNASaccharomyces cerevisiaeCryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)ELECTRON MICROSCOPY4.42018-07-11
331TRA|1|ATRNAPHESaccharomyces cerevisiaeRESTRAINED REFINEMENT OF THE MONOCLINIC FORM OF YEAST PHENYLALANINE TRANSFER RNA. TEMPERATURE FACTORS AND DYNAMICS, COORDINATED WATERS, AND BASE-PAIR PROPELLER TWIST ANGLESX-RAY DIFFRACTION31986-07-14
341JGQ|1|CtRNA(Phe), MESSENGER RNA MF36The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION52001-07-20
351JGQ|1|BtRNA(Phe)The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION52001-07-20
364V42|1|ACTRNA(PHE), A- AND P-SITE MESSENGER RNA CODONSCrystal structure of the ribosome at 5.5 A resolution.X-RAY DIFFRACTION5.52014-07-09
374V42|1|ABTRNA(PHE), A- AND P-SITE MESSENGER RNA CODONSCrystal structure of the ribosome at 5.5 A resolution.X-RAY DIFFRACTION5.52014-07-09
381JGO|1|CtRNA(Phe), MESSENGER RNA MK27The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION5.62001-07-20
391JGO|1|BtRNA(Phe), MESSENGER RNA MK27The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION5.62001-07-20
404V69|1|AYA/T-site tRNA Phe, mRNATernary complex-bound E.coli 70S ribosome.ELECTRON MICROSCOPY6.72014-07-09
411JGP|1|CtRNA(Phe), MESSENGER RNA MV36The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION72001-07-20
421JGP|1|BtRNA(Phe), MESSENGER RNA MV36The Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION72001-07-20
431QZB|1|BPhe-tRNACoordinates of the A-site tRNA model fitted into the cryo-EM map of 70S ribosome in the pre-translocational stateELECTRON MICROSCOPY92003-11-04
441QZA|1|BPhe-tRNACoordinates of the A/T site tRNA model fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosomeELECTRON MICROSCOPY102003-11-04
451LS2|1|BPhenylalanine transfer RNASaccharomyces cerevisiaeFitting of EF-Tu and tRNA in the Low Resolution Cryo-EM Map of an EF-Tu Ternary Complex (GDP and Kirromycin) Bound to E. coli 70S RibosomeELECTRON MICROSCOPY16.82002-06-26
461FCW|1|ATRNAPHESaccharomyces cerevisiaeTRNA POSITIONS DURING THE ELONGATION CYCLEELECTRON MICROSCOPY172000-08-11
471FCW|1|DTRNAPHESaccharomyces cerevisiaeTRNA POSITIONS DURING THE ELONGATION CYCLEELECTRON MICROSCOPY172000-08-11
481FCW|1|BTRNAPHESaccharomyces cerevisiaeTRNA POSITIONS DURING THE ELONGATION CYCLEELECTRON MICROSCOPY172000-08-11
491FCW|1|ETRNAPHESaccharomyces cerevisiaeTRNA POSITIONS DURING THE ELONGATION CYCLEELECTRON MICROSCOPY172000-08-11
501FCW|1|CTRNAPHESaccharomyces cerevisiaeTRNA POSITIONS DURING THE ELONGATION CYCLEELECTRON MICROSCOPY172000-08-11

Release history

Release3.1523.1533.1543.1553.1563.1573.1583.1593.1603.1613.1623.1633.1643.1653.1663.1673.1683.1693.1703.1713.1723.1733.1743.1753.1763.1773.1783.1793.1803.1813.1823.183
Date2020-11-112020-11-182020-11-252020-12-022020-12-092020-12-162020-12-232020-12-302021-01-062021-01-132021-01-202021-01-272021-02-032021-02-102021-02-172021-02-242021-03-032021-03-102021-03-172021-03-242021-03-312021-04-072021-04-142021-04-212021-04-282021-05-052021-05-122021-05-192021-05-262021-06-022021-06-092021-06-16

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16XIQ|1|AXCryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative StressELECTRON MICROSCOPY4.276
26XIQ|1|AZCryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative StressELECTRON MICROSCOPY4.276
36XIR|1|AZCryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative StressELECTRON MICROSCOPY3.273
46XIR|1|AXCryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative StressELECTRON MICROSCOPY3.273
56GQ1|1|AXCryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)ELECTRON MICROSCOPY4.476
66GQB|1|AXCryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)ELECTRON MICROSCOPY3.976
76GQV|1|AYCryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)ELECTRON MICROSCOPY476
86GZ3|1|BwtRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)ELECTRON MICROSCOPY3.676
96GZ5|1|BwtRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)ELECTRON MICROSCOPY3.576
106LVR|1|BCrystal structure of the PPR domain of Arabidopsis thaliana protein-only RNase P 1 (PRORP1) in complex with tRNAX-RAY DIFFRACTION2.8558
116LVR|1|DCrystal structure of the PPR domain of Arabidopsis thaliana protein-only RNase P 1 (PRORP1) in complex with tRNAX-RAY DIFFRACTION2.8558
125AXM|1|PCrystal structure of Thg1 like protein (TLP) with tRNA(Phe)X-RAY DIFFRACTION2.2172
135AXN|1|PCrystal structure of Thg1 like protein (TLP) with tRNA(Phe) and GDPNPX-RAY DIFFRACTION2.765
141EVV|1|ACRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRANSFER RNA AT 2.0 A RESOLUTIONX-RAY DIFFRACTION262
151I9V|1|ACRYSTAL STRUCTURE ANALYSIS OF A TRNA-NEOMYCIN COMPLEXX-RAY DIFFRACTION2.674
164TRA|1|ARESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALSX-RAY DIFFRACTION362
171FCW|1|ETRNA POSITIONS DURING THE ELONGATION CYCLEELECTRON MICROSCOPY1762
181FCW|1|DTRNA POSITIONS DURING THE ELONGATION CYCLEELECTRON MICROSCOPY1762
191FCW|1|CTRNA POSITIONS DURING THE ELONGATION CYCLEELECTRON MICROSCOPY1762
201FCW|1|ATRNA POSITIONS DURING THE ELONGATION CYCLEELECTRON MICROSCOPY1762
211FCW|1|BTRNA POSITIONS DURING THE ELONGATION CYCLEELECTRON MICROSCOPY1762
226TNA|1|ACRYSTAL STRUCTURE OF YEAST PHENYLALANINE T-RNA. I.CRYSTALLOGRAPHIC REFINEMENTX-RAY DIFFRACTION2.762
231EHZ|1|AThe crystal structure of yeast phenylalanine tRNA at 1.93 A resolutionX-RAY DIFFRACTION1.9362
241TN1|1|ACRYSTALLOGRAPHIC AND BIOCHEMICAL INVESTIGATION OF THE LEAD(II)-CATALYZED HYDROLYSIS OF YEAST PHENYLALANINE TRNAX-RAY DIFFRACTION362
251TN2|1|ACRYSTALLOGRAPHIC AND BIOCHEMICAL INVESTIGATION OF THE LEAD(II)-CATALYZED HYDROLYSIS OF YEAST PHENYLALANINE T-RNAX-RAY DIFFRACTION362
264TNA|1|AFURTHER REFINEMENT OF THE STRUCTURE OF YEAST T-RNA-PHEX-RAY DIFFRACTION2.562
271TRA|1|ARESTRAINED REFINEMENT OF THE MONOCLINIC FORM OF YEAST PHENYLALANINE TRANSFER RNA. TEMPERATURE FACTORS AND DYNAMICS, COORDINATED WATERS, AND BASE-PAIR PROPELLER TWIST ANGLESX-RAY DIFFRACTION362
284V42|1|ABCrystal structure of the ribosome at 5.5 A resolution.X-RAY DIFFRACTION5.562
291JGP|1|BThe Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION762
301JGO|1|BThe Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION5.662
311JGQ|1|BThe Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION562
321SZ1|1|FMechanism of CCA-adding enzymes specificity revealed by crystal structures of ternary complexesX-RAY DIFFRACTION6.2162
331SZ1|1|EMechanism of CCA-adding enzymes specificity revealed by crystal structures of ternary complexesX-RAY DIFFRACTION6.2162
343WC2|1|PCrystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG)X-RAY DIFFRACTION3.6474
353WC2|1|QCrystal structure of C. albicans tRNA(His) guanylyltransferase (Thg1) with a tRNA(Phe)(GUG)X-RAY DIFFRACTION3.6473
361JGO|1|CThe Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION5.662
374V42|1|ACCrystal structure of the ribosome at 5.5 A resolution.X-RAY DIFFRACTION5.562
381JGQ|1|CThe Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGQ, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION562
391JGP|1|CThe Path of Messenger RNA Through the Ribosome. THIS FILE, 1JGP, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIYX-RAY DIFFRACTION762
405M1J|1|A3Nonstop ribosomal complex bound with Dom34 and Hbs1ELECTRON MICROSCOPY3.362
416XZB|1|g2E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).ELECTRON MICROSCOPY2.5461
426XZ7|1|gE. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).ELECTRON MICROSCOPY2.161
431TTT|1|DPhe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-RAY DIFFRACTION2.762
441OB2|1|BE. coli elongation factor EF-Tu complexed with the antibiotic kirromycin, a GTP analog, and Phe-tRNAX-RAY DIFFRACTION3.3563
451TTT|1|EPhe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-RAY DIFFRACTION2.762
461TTT|1|FPhe-tRNA, elongation factoR EF-TU:GDPNP ternary complexX-RAY DIFFRACTION2.762
474V69|1|AYTernary complex-bound E.coli 70S ribosome.ELECTRON MICROSCOPY6.776
481QZB|1|BCoordinates of the A-site tRNA model fitted into the cryo-EM map of 70S ribosome in the pre-translocational stateELECTRON MICROSCOPY975
491LS2|1|BFitting of EF-Tu and tRNA in the Low Resolution Cryo-EM Map of an EF-Tu Ternary Complex (GDP and Kirromycin) Bound to E. coli 70S RibosomeELECTRON MICROSCOPY16.876
501QZA|1|BCoordinates of the A/T site tRNA model fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosomeELECTRON MICROSCOPY1075