#IFECompound(s)RNA source organismTitleMethodResolutionDate
14YBB|1|DA (rep)23S rRNAEscherichia coliHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.12015-03-18
24V54|1|DB23S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-RAY DIFFRACTION3.32014-07-09
34V54|1|BB23S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-RAY DIFFRACTION3.32014-07-09
44WWW|1|RA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to CEM-101X-RAY DIFFRACTION3.12014-12-24
54V7T|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to chloramphenicol.X-RAY DIFFRACTION3.192014-07-09
64V6C|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.192014-07-09
74V52|1|DB23S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-RAY DIFFRACTION3.212014-07-09
84V7S|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to telithromycin.X-RAY DIFFRACTION3.252014-07-09
94V52|1|BB23S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-RAY DIFFRACTION3.212014-07-09
102J28|1|B23S RIBOSOMAL RNAEscherichia coliMODEL OF E. COLI SRP BOUND TO 70S RNCSELECTRON MICROSCOPY9.52006-11-08
114V4Q|1|DB23S ribosomal RNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.462014-07-09
124V7U|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to erythromycin.X-RAY DIFFRACTION3.12014-07-09
134V4Q|1|BB23S ribosomal RNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.462014-07-09
144V50|1|DB23S ribosomal RNAEscherichia coliCrystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.222014-07-09
154V53|1|DB23S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.X-RAY DIFFRACTION3.542014-07-09
163J5L|1|A23S ribsomal RNA, 5'-R(*CP*CP*A)-3', 5'-R(*CP*(MA6))-3'Escherichia coliStructure of the E. coli 50S subunit with ErmBL nascent chainELECTRON MICROSCOPY6.62014-03-26
174V9P|1|EA23S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
184V50|1|BB23S ribosomal RNAEscherichia coliCrystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.222014-07-09
194V85|1|BA23S rRNAEscherichia coliCrystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.X-RAY DIFFRACTION3.22014-07-09
204V53|1|BB23S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.X-RAY DIFFRACTION3.542014-07-09
214V4H|1|DB23S RIBOSOMAL RNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-RAY DIFFRACTION3.462014-07-09
224V9O|1|EA23S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
234V4H|1|BB23S RIBOSOMAL RNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-RAY DIFFRACTION3.462014-07-09
244V55|1|DB23S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).X-RAY DIFFRACTION42014-07-09
254V57|1|BB23S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-RAY DIFFRACTION3.52014-07-09
264V7V|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to clindamycin.X-RAY DIFFRACTION3.292014-07-09
274V64|1|BB23S ribosomal RNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-RAY DIFFRACTION3.52014-07-09
284V57|1|DB23S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-RAY DIFFRACTION3.52014-07-09
294V64|1|DB23S ribosomal RNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-RAY DIFFRACTION3.52014-07-09
304V5Y|1|DB23S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).X-RAY DIFFRACTION4.452014-07-09
314V5Y|1|BB23S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).X-RAY DIFFRACTION4.452014-07-09
324V55|1|BB23S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).X-RAY DIFFRACTION42014-07-09
334V89|1|BA23S rRNAEscherichia coliCrystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)X-RAY DIFFRACTION3.72014-07-09
344V6D|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.812014-07-09
354V9D|1|CA23S rRNAEscherichia coliStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION32014-07-09
364U27|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.82014-07-30
374U25|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.92014-07-30
384U24|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.92014-07-30
394V6E|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.712014-07-09
404V9P|1|CA23S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
414V9P|1|AA23S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
424V9O|1|AA23S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
434WF1|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to negamycin.X-RAY DIFFRACTION3.092014-11-05
444U1U|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.952014-07-30
453J7Z|1|A23S rRNA, P-tRNA CCA-endEscherichia coliStructure of the E. coli 50S subunit with ErmCL nascent chainELECTRON MICROSCOPY3.92014-10-22
464V9O|1|CA23S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
474V56|1|DB23S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.X-RAY DIFFRACTION3.932014-07-09
484UY8|1|ARRNA-23S RIBOSOMAL RNAEscherichia coliMolecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosomeELECTRON MICROSCOPY3.82014-10-29
494U1V|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION32014-07-30
504V56|1|BB23S rRNAEscherichia coliCrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.X-RAY DIFFRACTION3.932014-07-09
514V6T|1|BA23S ribosomal RNAEscherichia coliStructure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loadingELECTRON MICROSCOPY8.32014-07-09
524V7B|1|BA23S ribosomal RNAEscherichia coliVisualization of two tRNAs trapped in transit during EF-G-mediated translocationELECTRON MICROSCOPY6.82014-07-09
534V9P|1|GA23S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
544U20|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.92014-07-30
554U26|1|BA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.82014-07-30
564YBB|1|CA23S rRNAEscherichia coliHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.12015-03-18
574WOI|1|BA23S ribosomal RNAEscherichia coli4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION32015-08-05
583J9Y|1|A23S ribosomal RNAEscherichia coliCryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosomeELECTRON MICROSCOPY3.92015-04-15
595AFI|1|A23S ribosomal RNAEscherichia coli2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.92015-03-11
604V9D|1|DA23S rRNAEscherichia coliStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION32014-07-09
615AKA|1|B23S ribosomal RNAEscherichia coliEM structure of ribosome-SRP-FtsY complex in closed stateELECTRON MICROSCOPY5.72015-03-25
624U1U|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.952014-07-30
634V6D|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.812014-07-09
644WOI|1|CA23S ribosomal RNAEscherichia coli4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION32015-08-05
654U20|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.92014-07-30
664V6C|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.192014-07-09
674V9C|1|DA23S ribosomal RNAEscherichia coliAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.32014-07-09
684V5H|1|BB23S RIBOSOMAL RNAEscherichia coliE.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.ELECTRON MICROSCOPY5.82014-07-09
694U1V|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION32014-07-30
704V6V|1|BA23S ribosomal RNAEscherichia coliTetracycline resistance protein Tet(O) bound to the ribosomeELECTRON MICROSCOPY9.82014-07-09
714V69|1|BB23S ribosomal RNAEscherichia coliTernary complex-bound E.coli 70S ribosome.ELECTRON MICROSCOPY6.72014-07-09
724U25|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.92014-07-30
734V6E|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.712014-07-09
744V9O|1|GA23S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
754V6M|1|B823S RIBOSOMAL RNAEscherichia coliStructure of the ribosome-SecYE complex in the membrane environmentELECTRON MICROSCOPY7.12014-07-09
764U27|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.82014-07-30
774V7S|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to telithromycin.X-RAY DIFFRACTION3.252014-07-09
784V7T|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to chloramphenicol.X-RAY DIFFRACTION3.192014-07-09
794V75|1|BA23S ribosomal RNAEscherichia coliE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1)ELECTRON MICROSCOPY122014-07-09
804V7V|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to clindamycin.X-RAY DIFFRACTION3.292014-07-09
814V6Y|1|BA23S ribosomal RNAEscherichia coliE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)ELECTRON MICROSCOPY122014-07-09
824WF1|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to negamycin.X-RAY DIFFRACTION3.092014-11-05
833J9Z|1|LA23S ribosomal RNAEscherichia coliActivation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor GELECTRON MICROSCOPY3.62015-07-01
844V7A|1|BA23S ribosomal RNAEscherichia coliE. coli 70S-fMetVal-tRNAVal post-translocation complex (post4)ELECTRON MICROSCOPY92014-07-09
854V6Z|1|BA23S ribosomal RNAEscherichia coliE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b)ELECTRON MICROSCOPY122014-07-09
864V72|1|BA23S ribosomal RNAEscherichia coliE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)ELECTRON MICROSCOPY132014-07-09
874V76|1|BA23S ribosomal RNAEscherichia coliE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)ELECTRON MICROSCOPY172014-07-09
884CSU|1|B23S RRNAEscherichia coliCryo-EM structures of the 50S ribosome subunit bound with ObgEELECTRON MICROSCOPY5.52014-06-04
894V73|1|BA23S ribosomal RNAEscherichia coliE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a)ELECTRON MICROSCOPY152014-07-09
904WWW|1|YA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to CEM-101X-RAY DIFFRACTION3.12014-12-24
914U24|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.92014-07-30
924V70|1|BA23S ribosomal RNAEscherichia coliE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3)ELECTRON MICROSCOPY172014-07-09
934V7I|1|A823S ribosomal RNAEscherichia coliRibosome-SecY complex.ELECTRON MICROSCOPY9.62014-07-09
944U26|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.82014-07-30
954V9C|1|BA23S ribosomal RNAEscherichia coliAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.32014-07-09
964V74|1|BA23S ribosomal RNAEscherichia coli70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b)ELECTRON MICROSCOPY172014-07-09
974V77|1|BA23S ribosomal RNAEscherichia coliE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b)ELECTRON MICROSCOPY172014-07-09
984V78|1|BA23S ribosomal RNAEscherichia coliE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)ELECTRON MICROSCOPY202014-07-09
994V6K|1|ABribosomal RNA 23SEscherichia coliStructural insights into cognate vs. near-cognate discrimination during decoding.ELECTRON MICROSCOPY8.252014-07-09
1004V71|1|BA23S ribosomal RNAEscherichia coliE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)ELECTRON MICROSCOPY202014-07-09
1014V79|1|BA23S ribosomal RNAEscherichia coliE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)ELECTRON MICROSCOPY152014-07-09
1023BBX|1|B23S ribosomal RNAEscherichia coliThe Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complexELECTRON MICROSCOPY102008-10-21
1034V7U|1|DA23S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to erythromycin.X-RAY DIFFRACTION3.12014-07-09
1044V6L|1|BB50S ribosomal RNA 23SEscherichia coliStructural insights into cognate vs. near-cognate discrimination during decoding.ELECTRON MICROSCOPY13.22014-07-09
1053JA1|1|LA23S ribosomal RNAEscherichia coliActivation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor GELECTRON MICROSCOPY3.62015-07-01
1064V6N|1|AB23S ribosomal RNAEscherichia coliStructural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)ELECTRON MICROSCOPY12.12014-07-09
1074V7D|1|AA23S ribosomal RNAEscherichia coliStructure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)ELECTRON MICROSCOPY7.62014-07-09
1084V6O|1|BB23S ribomosomal RNAEscherichia coliStructural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)ELECTRON MICROSCOPY14.72014-07-09
1093J8G|1|B23S rRNAEscherichia coliElectron cryo-microscopy structure of EngA bound with the 50S ribosomal subunitELECTRON MICROSCOPY52014-11-26
1104V6R|1|BB23S ribomosomal RNAEscherichia coliStructural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)ELECTRON MICROSCOPY11.52014-07-09
1114V6Q|1|BB23S ribomosomal RNAEscherichia coliStructural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)ELECTRON MICROSCOPY11.52014-07-09
1124V6S|1|AB23S ribomosomal RNAEscherichia coliStructural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)ELECTRON MICROSCOPY13.12014-07-09
1134V6P|1|BB23S ribomosomal RNAEscherichia coliStructural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)ELECTRON MICROSCOPY13.52014-07-09
1144V7C|1|BA23S ribosomal RNAEscherichia coliStructure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)ELECTRON MICROSCOPY7.62014-07-09
1154V5B|1|AB23S RIBOSOMAL RNAEscherichia coliStructure of PDF binding helix in complex with the ribosomeX-RAY DIFFRACTION3.742014-07-09
1164V5B|1|CB23S RIBOSOMAL RNAEscherichia coliStructure of PDF binding helix in complex with the ribosomeX-RAY DIFFRACTION3.742014-07-09
1175ADY|1|B23S RRNAEscherichia coliCryo-EM structures of the 50S ribosome subunit bound with HflXELECTRON MICROSCOPY4.52015-10-14
1184V4V|1|B023S ribosomal RNAEscherichia coliStructure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056ELECTRON MICROSCOPY152014-07-09
1194V4W|1|B023S ribosomal RNAEscherichia coliStructure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143ELECTRON MICROSCOPY152014-07-09
1204V66|1|BB23S rRNAEscherichia coliStructure of the E. coli ribosome and the tRNAs in Post-accommodation stateELECTRON MICROSCOPY92014-07-09
1214V65|1|BB23S rRNAEscherichia coliStructure of the E. coli ribosome in the Pre-accommodation stateELECTRON MICROSCOPY92014-07-09
1223DG0|1|B23S Ribosomal RNA from E. coliEscherichia coliCoordinates of 16S and 23S rRNAs fitted into the cryo-EM map of EF-G-bound translocation complexELECTRON MICROSCOPY10.82009-02-03
1233DG4|1|B23S RibosomaL RNA from E. coliEscherichia coliCoordinates of 16S and 23S rRNAs fitted into the cryo-EM map of RF1-bound termination complexELECTRON MICROSCOPY12.82009-02-03
1242RDO|1|B23S RIBOSOMAL RNAEscherichia coli50S subunit with EF-G(GDPNP) and RRF boundELECTRON MICROSCOPY9.12008-03-04
1253DG2|1|B23S Ribosomal RNA from E. coliEscherichia coliCoordinates of 16S and 23S rRNAs fitted into the cryo-EM map of a pretranslocation complexELECTRON MICROSCOPY102009-02-03
1263DG5|1|B23S Ribosomal RNA from E. coliEscherichia coliCoordinates of 16S and 23S rRNAs fitted into the cryo-EM map of RF3-bound termination complexELECTRON MICROSCOPY15.52009-02-03
1274V47|1|A023S ribosomal RNAEscherichia coliReal space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the EF-G.GTP state of E. coli 70S ribosomeELECTRON MICROSCOPY12.32014-07-09
1284V48|1|A023S ribosomal RNAEscherichia coliReal space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosomeELECTRON MICROSCOPY11.52014-07-09

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14V4W|1|B0Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143ELECTRON MICROSCOPY152740
24V4V|1|B0Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056ELECTRON MICROSCOPY152740
34V65|1|BBStructure of the E. coli ribosome in the Pre-accommodation stateELECTRON MICROSCOPY92903
44V66|1|BBStructure of the E. coli ribosome and the tRNAs in Post-accommodation stateELECTRON MICROSCOPY92903
54V79|1|BAE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)ELECTRON MICROSCOPY152903
64V71|1|BAE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)ELECTRON MICROSCOPY202903
74V6Y|1|BAE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)ELECTRON MICROSCOPY122903
84V7A|1|BAE. coli 70S-fMetVal-tRNAVal post-translocation complex (post4)ELECTRON MICROSCOPY92903
94V6Z|1|BAE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b)ELECTRON MICROSCOPY122903
104V78|1|BAE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)ELECTRON MICROSCOPY202903
114V76|1|BAE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)ELECTRON MICROSCOPY172903
124V77|1|BAE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b)ELECTRON MICROSCOPY172903
134CSU|1|BCryo-EM structures of the 50S ribosome subunit bound with ObgEELECTRON MICROSCOPY5.52903
145AKA|1|BEM structure of ribosome-SRP-FtsY complex in closed stateELECTRON MICROSCOPY5.72841
155ADY|1|BCryo-EM structures of the 50S ribosome subunit bound with HflXELECTRON MICROSCOPY4.52903
164V7I|1|A8Ribosome-SecY complex.ELECTRON MICROSCOPY9.62903
174V6K|1|ABStructural insights into cognate vs. near-cognate discrimination during decoding.ELECTRON MICROSCOPY8.252880
184V6L|1|BBStructural insights into cognate vs. near-cognate discrimination during decoding.ELECTRON MICROSCOPY13.22880
194V5B|1|CBStructure of PDF binding helix in complex with the ribosomeX-RAY DIFFRACTION3.742841
202J28|1|BMODEL OF E. COLI SRP BOUND TO 70S RNCSELECTRON MICROSCOPY9.52841
214V4Q|1|DBCrystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.462841
224V4H|1|DBCrystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-RAY DIFFRACTION3.462841
234V54|1|DBCrystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-RAY DIFFRACTION3.32841
244V55|1|DBCrystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).X-RAY DIFFRACTION42841
254V53|1|DBCrystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.X-RAY DIFFRACTION3.542841
264V52|1|DBCrystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-RAY DIFFRACTION3.212841
274V5Y|1|DBCrystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).X-RAY DIFFRACTION4.452841
284V64|1|DBCrystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-RAY DIFFRACTION3.52841
294V57|1|DBCrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-RAY DIFFRACTION3.52841
304V56|1|DBCrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.X-RAY DIFFRACTION3.932841
314V50|1|DBCrystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.222841
324YBB|1|DAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.12883
334V6E|1|BACrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.712854
344V6D|1|BACrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.812854
354V7V|1|BACrystal structure of the E. coli ribosome bound to clindamycin.X-RAY DIFFRACTION3.292854
364V7S|1|BACrystal structure of the E. coli ribosome bound to telithromycin.X-RAY DIFFRACTION3.252854
374WWW|1|RACrystal structure of the E. coli ribosome bound to CEM-101X-RAY DIFFRACTION3.12854
384V6C|1|BACrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.192854
394V7T|1|BACrystal structure of the E. coli ribosome bound to chloramphenicol.X-RAY DIFFRACTION3.192854
404V7U|1|BACrystal structure of the E. coli ribosome bound to erythromycin.X-RAY DIFFRACTION3.12854
413J5L|1|AStructure of the E. coli 50S subunit with ErmBL nascent chainELECTRON MICROSCOPY6.62853
424V89|1|BACrystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome (without viomycin)X-RAY DIFFRACTION3.72853
434V85|1|BACrystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.X-RAY DIFFRACTION3.22853
444V9P|1|CAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
454V9O|1|CAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
463J7Z|1|AStructure of the E. coli 50S subunit with ErmCL nascent chainELECTRON MICROSCOPY3.92854
474UY8|1|AMolecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosomeELECTRON MICROSCOPY3.82854
484V9O|1|AAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
494V9P|1|AAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
504V9P|1|GAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
514V9O|1|GAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
524V9O|1|EAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
534V9P|1|EAControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92854
544WOI|1|CA4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION32897
554V9C|1|BAAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.32897
564V9D|1|DAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION32896
574U1U|1|DACrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.952897
584U20|1|DACrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.92897
594U1V|1|DACrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION32897
604WF1|1|DACrystal structure of the E. coli ribosome bound to negamycin.X-RAY DIFFRACTION3.092897
614U27|1|DACrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.82897
624U25|1|DACrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.92897
634U26|1|DACrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.82897
644U24|1|DACrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.92897
654YBB|1|CAHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.12876
664V7U|1|DACrystal structure of the E. coli ribosome bound to erythromycin.X-RAY DIFFRACTION3.12841
674V7V|1|DACrystal structure of the E. coli ribosome bound to clindamycin.X-RAY DIFFRACTION3.292841
684V7S|1|DACrystal structure of the E. coli ribosome bound to telithromycin.X-RAY DIFFRACTION3.252841
694WWW|1|YACrystal structure of the E. coli ribosome bound to CEM-101X-RAY DIFFRACTION3.12841
704V7T|1|DACrystal structure of the E. coli ribosome bound to chloramphenicol.X-RAY DIFFRACTION3.192841
714V6C|1|DACrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.192841
724V6E|1|DACrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.712841
734V6D|1|DACrystal structure of the E. coli 70S ribosome in an intermediate state of ratchetingX-RAY DIFFRACTION3.812841
744V50|1|BBCrystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.X-RAY DIFFRACTION3.222841
754V54|1|BBCrystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).X-RAY DIFFRACTION3.32841
764V56|1|BBCrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin.X-RAY DIFFRACTION3.932841
774V64|1|BBCrystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.X-RAY DIFFRACTION3.52841
784V57|1|BBCrystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.X-RAY DIFFRACTION3.52841
794V52|1|BBCrystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.X-RAY DIFFRACTION3.212841
804V5Y|1|BBCrystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).X-RAY DIFFRACTION4.452841
814V55|1|BBCrystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin and ribosome recycling factor (RRF).X-RAY DIFFRACTION42841
824V53|1|BBCrystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.X-RAY DIFFRACTION3.542841
834V4H|1|BBCrystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.X-RAY DIFFRACTION3.462841
844V4Q|1|BBCrystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.X-RAY DIFFRACTION3.462841
854V5B|1|ABStructure of PDF binding helix in complex with the ribosomeX-RAY DIFFRACTION3.742841
863J9Y|1|ACryo-EM structure of tetracycline resistance protein TetM bound to a translating E.coli ribosomeELECTRON MICROSCOPY3.92876
875AFI|1|A2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.92876
883J9Z|1|LAActivation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor GELECTRON MICROSCOPY3.62904
894V69|1|BBTernary complex-bound E.coli 70S ribosome.ELECTRON MICROSCOPY6.72903
904V6V|1|BATetracycline resistance protein Tet(O) bound to the ribosomeELECTRON MICROSCOPY9.82881
914V6M|1|B8Structure of the ribosome-SecYE complex in the membrane environmentELECTRON MICROSCOPY7.12904
924V5H|1|BBE.Coli 70s Ribosome Stalled During Translation Of Tnac Leader Peptide.ELECTRON MICROSCOPY5.82903
934V6S|1|ABStructural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)ELECTRON MICROSCOPY13.12880
944V6N|1|ABStructural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)ELECTRON MICROSCOPY12.12880
954V6O|1|BBStructural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)ELECTRON MICROSCOPY14.72880
964V6P|1|BBStructural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)ELECTRON MICROSCOPY13.52880
974V6R|1|BBStructural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)ELECTRON MICROSCOPY11.52880
984V6Q|1|BBStructural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)ELECTRON MICROSCOPY11.52880
993JA1|1|LAActivation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor GELECTRON MICROSCOPY3.62904
1004V7D|1|AAStructure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)ELECTRON MICROSCOPY7.62897
1014V7C|1|BAStructure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)ELECTRON MICROSCOPY7.62897
1024WOI|1|BA4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION32897
1034V9C|1|DAAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.32897
1044U24|1|BACrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.92897
1054U26|1|BACrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.82897
1064U25|1|BACrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.92897
1074U27|1|BACrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.82897
1084WF1|1|BACrystal structure of the E. coli ribosome bound to negamycin.X-RAY DIFFRACTION3.092897
1094U1V|1|BACrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION32897
1104U20|1|BACrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.92897
1114U1U|1|BACrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.952897
1124V9D|1|CAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION32897
1134V6T|1|BAStructure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loadingELECTRON MICROSCOPY8.32903
1144V7B|1|BAVisualization of two tRNAs trapped in transit during EF-G-mediated translocationELECTRON MICROSCOPY6.82854
1154V75|1|BAE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1)ELECTRON MICROSCOPY122903
1164V70|1|BAE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3)ELECTRON MICROSCOPY172903
1174V72|1|BAE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)ELECTRON MICROSCOPY132903
1184V73|1|BAE. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a)ELECTRON MICROSCOPY152903
1194V74|1|BA70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b)ELECTRON MICROSCOPY172903
1203BBX|1|BThe Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complexELECTRON MICROSCOPY102902
1213J8G|1|BElectron cryo-microscopy structure of EngA bound with the 50S ribosomal subunitELECTRON MICROSCOPY52874
1223DG0|1|BCoordinates of 16S and 23S rRNAs fitted into the cryo-EM map of EF-G-bound translocation complexELECTRON MICROSCOPY10.82841
1232RDO|1|B50S subunit with EF-G(GDPNP) and RRF boundELECTRON MICROSCOPY9.12841
1243DG2|1|BCoordinates of 16S and 23S rRNAs fitted into the cryo-EM map of a pretranslocation complexELECTRON MICROSCOPY102841
1254V47|1|A0Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the EF-G.GTP state of E. coli 70S ribosomeELECTRON MICROSCOPY12.32536
1263DG5|1|BCoordinates of 16S and 23S rRNAs fitted into the cryo-EM map of RF3-bound termination complexELECTRON MICROSCOPY15.52841
1273DG4|1|BCoordinates of 16S and 23S rRNAs fitted into the cryo-EM map of RF1-bound termination complexELECTRON MICROSCOPY12.82841
1284V48|1|A0Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosomeELECTRON MICROSCOPY11.52536