Equivalence class NR_20.0_87089.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5UP6|1|R (rep) | RNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') | CryoEM structure of HK022 Nun - E.coli RNA polymerase elongation complex | Electron microscopy | 3.74 | 2017-03-29 | ||||
| 2 | 5UPA|1|R | RNA (5'-R(*GP*CP*A*UP*UP*CP*AP*AP*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') | CryoEM structure of crosslinked E.coli RNA polymerase elongation complex | Electron microscopy | 4.05 | 2017-04-05 | ||||
| 3 | 6M6C|1|R | RNA | Thermus thermophilus | CryoEM structure of Thermus thermophilus RNA polymerase elongation complex | Electron microscopy | 3.1 | 2020-10-14 | |||
| 4 | 6C6T|1|R | RNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*CP*GP*AP*GP*AP*GP*GP*UP*A)-3') | Escherichia coli | CryoEM structure of E.coli RNA polymerase elongation complex bound with RfaH | Electron microscopy | 3.5 | 2018-07-25 | |||
| 5 | 6C6U|1|R | RNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*CP*GP*AP*GP*AP*GP*GP*UP*A)-3') | Escherichia coli | CryoEM structure of E.coli RNA polymerase elongation complex bound with NusG | Electron microscopy | 3.7 | 2018-07-25 | |||
| 6 | 6ALG|1|R | RNA (5'-R(P*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') | Escherichia virus T7 | CryoEM structure of HK022 Nun - E.coli RNA polymerase elongation complex | Electron microscopy | 3.7 | 2017-08-16 | |||
| 7 | 6C6S|1|R | RNA (5'-R(*GP*CP*AP*UP*UP*CP*AP*AP*AP*GP*CP*CP*GP*AP*GP*AP*GP*GP*UP*A)-3') | Escherichia coli | CryoEM structure of E.coli RNA polymerase elongation complex bound with RfaH | Electron microscopy | 3.7 | 2018-07-25 | |||
| 8 | 6ALF|1|R | RNA (5'-R(P*AP*GP*CP*GP*GP*AP*GP*AP*GP*GP*UP*A)-3') | Escherichia virus T7 | CryoEM structure of crosslinked E.coli RNA polymerase elongation complex | Electron microscopy | 4.1 | 2017-08-16 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_20.0_87089.2 | NR_20.0_00306.1 | 3.151 | (2) 6ALF|1|R, 6ALG|1|R | (6) 6C6S|1|R, 6M6C|1|R, 6C6U|1|R, 5UP6|1|R, 5UPA|1|R, 6C6T|1|R | (0) |
| NR_20.0_87089.2 | NR_20.0_06923.1 | 3.151 | (1) 6M6C|1|R | (7) 6C6U|1|R, 5UPA|1|R, 6ALG|1|R, 6C6T|1|R, 5UP6|1|R, 6ALF|1|R, 6C6S|1|R | (0) |
| NR_20.0_87089.2 | NR_20.0_15897.1 | 3.151 | (3) 6C6T|1|R, 6C6S|1|R, 6C6U|1|R | (5) 6ALG|1|R, 5UPA|1|R, 5UP6|1|R, 6ALF|1|R, 6M6C|1|R | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6C6S|1|R | CryoEM structure of E.coli RNA polymerase elongation complex bound with RfaH | ELECTRON MICROSCOPY | 3.7 | 10 |
| 2 | 6C6T|1|R | CryoEM structure of E.coli RNA polymerase elongation complex bound with RfaH | ELECTRON MICROSCOPY | 3.5 | 10 |
| 3 | 6C6U|1|R | CryoEM structure of E.coli RNA polymerase elongation complex bound with NusG | ELECTRON MICROSCOPY | 3.7 | 10 |
| 4 | 6ALF|1|R | CryoEM structure of crosslinked E.coli RNA polymerase elongation complex | ELECTRON MICROSCOPY | 4.1 | 12 |
| 5 | 5UPA|1|R | CryoEM structure of crosslinked E.coli RNA polymerase elongation complex | ELECTRON MICROSCOPY | 4.05 | 17 |
| 6 | 6M6C|1|R | CryoEM structure of Thermus thermophilus RNA polymerase elongation complex | ELECTRON MICROSCOPY | 3.1 | 10 |
| 7 | 6ALG|1|R | CryoEM structure of HK022 Nun - E.coli RNA polymerase elongation complex | ELECTRON MICROSCOPY | 3.7 | 10 |
| 8 | 5UP6|1|R | CryoEM structure of HK022 Nun - E.coli RNA polymerase elongation complex | ELECTRON MICROSCOPY | 3.74 | 17 |