Equivalence class NR_20.0_88987.1 Obsolete
# | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
---|---|---|---|---|---|---|---|
1 | 4IOA|1|X (rep) | 23S ribosomal RNA | Deinococcus radiodurans | Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans | X-RAY DIFFRACTION | 3.2 | 2013-03-06 |
2 | 4IO9|1|X | 23S ribosomal RNA | Deinococcus radiodurans | Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans | X-RAY DIFFRACTION | 3.2 | 2013-03-06 |
3 | 4IOC|1|X | 23S ribosomal RNA | Deinococcus radiodurans | Crystal structure of compound 4f bound to large ribosomal subunit (50S) from Deinococcus radiodurans | X-RAY DIFFRACTION | 3.6 | 2013-03-06 |
4 | 2ZJR|1|X | ribosomal 23S RNA | Deinococcus radiodurans | Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans | X-RAY DIFFRACTION | 2.91 | 2008-06-17 |
5 | 3CF5|1|X | RRNA-23S RIBOSOMAL RNA | Deinococcus radiodurans | Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans | X-RAY DIFFRACTION | 3.3 | 2008-06-17 |
6 | 2ZJQ|1|X | ribosomal 23S RNA | Deinococcus radiodurans | Interaction of L7 with L11 induced by Microccocin binding to the Deinococcus radiodurans 50S subunit | X-RAY DIFFRACTION | 3.3 | 2008-06-17 |
7 | 2ZJP|1|X | RIBOSOMAL 23S RNA | Deinococcus radiodurans | Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans | X-RAY DIFFRACTION | 3.7 | 2008-06-17 |
8 | 3DLL|1|X | rRNA-23S ribosomal RNA | Deinococcus radiodurans | The oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioning | X-RAY DIFFRACTION | 3.5 | 2008-09-16 |
9 | 2AAR|1|0 | 23S ribosomal RNA | Deinococcus radiodurans | Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome. | X-RAY DIFFRACTION | 3.5 | 2005-08-23 |
10 | 2OGM|1|0 | 23S ribosomal RNA | Deinococcus radiodurans | The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative SB-571519 | X-RAY DIFFRACTION | 3.5 | 2007-05-01 |
11 | 3PIO|1|X | RIBOSOMAL 23S RNA | Deinococcus radiodurans | Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit | X-RAY DIFFRACTION | 3.25 | 2011-02-23 |
12 | 3JQ4|1|A | 23S ribosomal RNA | Deinococcus radiodurans | The structure of the complex of the large ribosomal subunit from D. Radiodurans with the antibiotic lankacidin | X-RAY DIFFRACTION | 3.52 | 2010-09-08 |
13 | 2D3O|1|0 | 23S RIBOSOMAL RNA | Deinococcus radiodurans | Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans | X-RAY DIFFRACTION | 3.35 | 2005-12-06 |
14 | 1Y69|1|0 | 23S ribosomal RNA | Deinococcus radiodurans | RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans | X-RAY DIFFRACTION | 3.33 | 2005-03-01 |
15 | 3PIP|1|X | RIBOSOMAL 23S RNA | Deinococcus radiodurans | Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit | X-RAY DIFFRACTION | 3.45 | 2011-02-23 |
16 | 2OGO|1|0 | 23S ribosomal RNA | Deinococcus radiodurans | The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833) | X-RAY DIFFRACTION | 3.66 | 2007-05-01 |
17 | 1JZY|1|A | 23S rRNA | Deinococcus radiodurans | Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria | X-RAY DIFFRACTION | 3.5 | 2001-10-26 |
18 | 1K01|1|A | 23S rRNA | Deinococcus radiodurans | Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria | X-RAY DIFFRACTION | 3.5 | 2001-10-26 |
19 | 1JZX|1|A | 23S rRNA | Deinococcus radiodurans | Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria | X-RAY DIFFRACTION | 3.1 | 2001-10-26 |
20 | 1JZZ|1|A | 23S rRNA | Deinococcus radiodurans | Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria | X-RAY DIFFRACTION | 3.8 | 2001-10-26 |
21 | 1J5A|1|A | 23S RRNA | Deinococcus radiodurans | STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA | X-RAY DIFFRACTION | 3.5 | 2002-03-08 |
22 | 2O44|1|A | 23S rRNA | Deinococcus radiodurans | Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin | X-RAY DIFFRACTION | 3.3 | 2007-12-04 |
23 | 2OGN|1|0 | 23S ribosomal RNA | Deinococcus radiodurans | The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative SB-280080 | X-RAY DIFFRACTION | 3.56 | 2007-05-01 |
24 | 1NWX|1|0 | 23S RIBOSOMAL RNA | Deinococcus radiodurans | COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773 | X-RAY DIFFRACTION | 3.5 | 2003-03-18 |
25 | 1OND|1|0 | 23S RIBOSOMAL RNA | Deinococcus radiodurans | THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC | X-RAY DIFFRACTION | 3.4 | 2003-04-15 |
26 | 1NWY|1|0 | 23S RIBOSOMAL RRNA | Deinococcus radiodurans | COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN | X-RAY DIFFRACTION | 3.3 | 2003-03-18 |
27 | 1NKW|1|0 | 23S ribosomal RNA | Deinococcus radiodurans | Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans | X-RAY DIFFRACTION | 3.1 | 2003-02-11 |
28 | 3FWO|1|A | 23S RIBOSOMAL RNA | Deinococcus radiodurans | The large ribosomal subunit from Deinococcus radiodurans complexed with Methymycin | X-RAY DIFFRACTION | 3.71 | 2010-01-19 |
29 | 1NJO|1|0 | 23S ribosomal RNA, RNA ACC(Puromycin) | Deinococcus radiodurans | The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP) | X-RAY DIFFRACTION | 3.7 | 2003-02-11 |
30 | 1P9X|1|0 | 23S RIBOSOMAL RNA | Deinococcus radiodurans | THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TELITHROMYCIN KETOLIDE ANTIBIOTIC | X-RAY DIFFRACTION | 3.4 | 2003-08-05 |
31 | 1NJP|1|0 | 23S ribosomal RNA | Deinococcus radiodurans | The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) | X-RAY DIFFRACTION | 3.5 | 2003-02-11 |
32 | 1NJM|1|0 | 23S ribosomal RNA | Deinococcus radiodurans | The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin | X-RAY DIFFRACTION | 3.6 | 2003-02-11 |
33 | 1NJN|1|0 | 23S ribosomal RNA | Deinococcus radiodurans | The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin | X-RAY DIFFRACTION | 3.7 | 2003-02-11 |
34 | 2O43|1|A | 23S rRNA | Deinococcus radiodurans | Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide erythromycylamine | X-RAY DIFFRACTION | 3.6 | 2007-12-04 |
35 | 1SM1|1|0 | 23S RIBOSOMAL RNA | Deinococcus radiodurans | COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN | X-RAY DIFFRACTION | 3.42 | 2004-08-03 |
36 | 1XBP|1|0 | 23S RIBOSOMAL RNA | Deinococcus radiodurans | Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with Tiamulin | X-RAY DIFFRACTION | 3.5 | 2005-03-01 |
37 | 1Z58|1|2 | 23S RIBOSOMAL RNA | Deinococcus radiodurans | Crystal structure of a complex of the ribosome large subunit with rapamycin | X-RAY DIFFRACTION | 3.8 | 2005-06-28 |
38 | 2O45|1|A | 23S rRNA | Deinococcus radiodurans | Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874 | X-RAY DIFFRACTION | 3.6 | 2007-12-04 |
Release history
Release | 2.0 | 2.1 | 2.2 | 2.3 | 2.4 | 2.5 | 2.6 | 2.7 | 2.8 | 2.9 | 2.10 | 2.11 | 2.12 | 2.13 | 2.14 | 2.15 | 2.16 | 2.17 | 2.18 | 2.19 | 2.20 | 2.21 | 2.22 | 2.23 | 2.24 | 2.25 | 2.26 | 2.27 | 2.28 | 2.29 | 2.30 | 2.31 | 2.32 | 2.33 | 2.34 |
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Date | 2014-12-05 | 2014-12-12 | 2014-12-19 | 2014-12-26 | 2015-01-02 | 2015-01-09 | 2015-01-16 | 2015-01-23 | 2015-01-30 | 2015-02-06 | 2015-02-13 | 2015-02-20 | 2015-02-27 | 2015-03-06 | 2015-03-13 | 2015-03-20 | 2015-03-27 | 2015-04-03 | 2015-04-10 | 2015-04-17 | 2015-04-24 | 2015-05-01 | 2015-05-08 | 2015-05-15 | 2015-05-22 | 2015-05-29 | 2015-06-05 | 2015-06-12 | 2015-06-19 | 2015-06-26 | 2015-07-03 | 2015-07-10 | 2015-07-17 | 2015-07-24 | 2015-07-31 |
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length |
---|---|---|---|---|---|
1 | 2D3O|1|0 | Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans | X-RAY DIFFRACTION | 3.35 | 2802 |
2 | 3PIP|1|X | Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit | X-RAY DIFFRACTION | 3.45 | 2644 |
3 | 3PIO|1|X | Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit | X-RAY DIFFRACTION | 3.25 | 2657 |
4 | 4IOC|1|X | Crystal structure of compound 4f bound to large ribosomal subunit (50S) from Deinococcus radiodurans | X-RAY DIFFRACTION | 3.6 | 2686 |
5 | 4IO9|1|X | Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans | X-RAY DIFFRACTION | 3.2 | 2686 |
6 | 4IOA|1|X | Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans | X-RAY DIFFRACTION | 3.2 | 2686 |
7 | 2ZJR|1|X | Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans | X-RAY DIFFRACTION | 2.91 | 2686 |
8 | 2ZJP|1|X | Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans | X-RAY DIFFRACTION | 3.7 | 2686 |
9 | 3CF5|1|X | Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans | X-RAY DIFFRACTION | 3.3 | 2686 |
10 | 2ZJQ|1|X | Interaction of L7 with L11 induced by Microccocin binding to the Deinococcus radiodurans 50S subunit | X-RAY DIFFRACTION | 3.3 | 2686 |
11 | 3DLL|1|X | The oxazolidinone antibiotics perturb the ribosomal peptidyl-transferase center and effect tRNA positioning | X-RAY DIFFRACTION | 3.5 | 2686 |
12 | 3FWO|1|A | The large ribosomal subunit from Deinococcus radiodurans complexed with Methymycin | X-RAY DIFFRACTION | 3.71 | 2765 |
13 | 2O44|1|A | Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin | X-RAY DIFFRACTION | 3.3 | 2766 |
14 | 2O43|1|A | Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide erythromycylamine | X-RAY DIFFRACTION | 3.6 | 2766 |
15 | 2OGO|1|0 | The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833) | X-RAY DIFFRACTION | 3.66 | 2765 |
16 | 2OGM|1|0 | The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative SB-571519 | X-RAY DIFFRACTION | 3.5 | 2766 |
17 | 2OGN|1|0 | The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative SB-280080 | X-RAY DIFFRACTION | 3.56 | 2766 |
18 | 2AAR|1|0 | Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome. | X-RAY DIFFRACTION | 3.5 | 2766 |
19 | 3JQ4|1|A | The structure of the complex of the large ribosomal subunit from D. Radiodurans with the antibiotic lankacidin | X-RAY DIFFRACTION | 3.52 | 2765 |
20 | 1P9X|1|0 | THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TELITHROMYCIN KETOLIDE ANTIBIOTIC | X-RAY DIFFRACTION | 3.4 | 2738 |
21 | 1SM1|1|0 | COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN | X-RAY DIFFRACTION | 3.42 | 2766 |
22 | 1XBP|1|0 | Inhibition of peptide bond formation by pleuromutilins: The structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with Tiamulin | X-RAY DIFFRACTION | 3.5 | 2766 |
23 | 1OND|1|0 | THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC | X-RAY DIFFRACTION | 3.4 | 2765 |
24 | 1NKW|1|0 | Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans | X-RAY DIFFRACTION | 3.1 | 2766 |
25 | 1NWX|1|0 | COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773 | X-RAY DIFFRACTION | 3.5 | 2766 |
26 | 1NWY|1|0 | COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN | X-RAY DIFFRACTION | 3.3 | 2766 |
27 | 1NJM|1|0 | The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin | X-RAY DIFFRACTION | 3.6 | 2766 |
28 | 1NJN|1|0 | The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with the antibiotic sparsomycin | X-RAY DIFFRACTION | 3.7 | 2766 |
29 | 1NJO|1|0 | The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a short substrate analog ACCPuromycin (ACCP) | X-RAY DIFFRACTION | 3.7 | 2766 |
30 | 1NJP|1|0 | The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) | X-RAY DIFFRACTION | 3.5 | 2766 |
31 | 1J5A|1|A | STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA | X-RAY DIFFRACTION | 3.5 | 2774 |
32 | 1JZZ|1|A | Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria | X-RAY DIFFRACTION | 3.8 | 2774 |
33 | 1JZY|1|A | Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria | X-RAY DIFFRACTION | 3.5 | 2774 |
34 | 1JZX|1|A | Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria | X-RAY DIFFRACTION | 3.1 | 2774 |
35 | 1K01|1|A | Structural Basis for the Interaction of Antibiotics with the Peptidyl Transferase Center in Eubacteria | X-RAY DIFFRACTION | 3.5 | 2774 |
36 | 1Y69|1|0 | RRF domain I in complex with the 50S ribosomal subunit from Deinococcus radiodurans | X-RAY DIFFRACTION | 3.33 | 2766 |
37 | 1Z58|1|2 | Crystal structure of a complex of the ribosome large subunit with rapamycin | X-RAY DIFFRACTION | 3.8 | 2766 |
38 | 2O45|1|A | Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874 | X-RAY DIFFRACTION | 3.6 | 2766 |