Equivalence class NR_20.0_89026.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5L00|1|A+ 5L00|1|B (rep) | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3') | synthetic construct | Self-complimentary RNA 15mer binding with GMP monomers | X-ray diffraction | 1.25 | 2016-12-07 | |||
| 2 | 5L00|1|C+ 5L00|1|D | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3') | synthetic construct | Self-complimentary RNA 15mer binding with GMP monomers | X-ray diffraction | 1.25 | 2016-12-07 | |||
| 3 | 5KRG|1|C+ 5KRG|1|D | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3') | synthetic construct | RNA 15mer duplex binding with PZG monomer | X-ray diffraction | 1.6 | 2016-12-07 | |||
| 4 | 5KRG|1|A+ 5KRG|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3') | synthetic construct | RNA 15mer duplex binding with PZG monomer | X-ray diffraction | 1.6 | 2016-12-07 | |||
| 5 | 5V0H|1|A+ 5V0H|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3') | synthetic construct | RNA duplex with 2-MeImpG analogue bound-one binding site | X-ray diffraction | 1.9 | 2017-03-08 |
Release history
| Release | 2.118 | 2.119 | 2.120 | 2.121 | 2.122 | 2.123 | 2.124 | 2.125 | 2.126 | 2.127 | 2.128 | 2.129 | 2.130 | 2.131 | 2.132 | 2.133 | 2.134 | 2.135 | 2.136 | 2.137 | 2.138 | 2.139 | 2.140 | 2.141 | 2.142 | 2.143 | 2.144 | 2.145 | 2.146 | 2.147 | 2.148 | 2.149 | 2.150 | 2.151 | 2.152 | 2.153 | 2.154 | 2.155 | 2.156 | 2.157 | 2.158 | 3.0 | 3.1 | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2017-03-10 | 2017-03-17 | 2017-03-24 | 2017-03-31 | 2017-04-11 | 2017-04-15 | 2017-04-26 | 2017-04-29 | 2017-05-09 | 2017-05-15 | 2017-05-20 | 2017-05-27 | 2017-06-07 | 2017-06-11 | 2017-06-21 | 2017-06-24 | 2017-06-28 | 2017-07-04 | 2017-07-10 | 2017-07-15 | 2017-07-26 | 2017-07-31 | 2017-08-05 | 2017-08-12 | 2017-08-19 | 2017-08-26 | 2017-09-03 | 2017-09-09 | 2017-09-16 | 2017-09-23 | 2017-09-30 | 2017-10-07 | 2017-10-14 | 2017-10-21 | 2017-10-28 | 2017-11-03 | 2017-11-10 | 2017-11-17 | 2017-11-24 | 2017-12-01 | 2017-12-08 | 2017-12-15 | 2017-12-22 | 2017-12-29 | 2018-01-05 | 2018-01-12 | 2018-01-19 | 2018-01-26 | 2018-02-02 | 2018-02-09 | 2018-02-16 | 2018-02-23 | 2018-03-01 | 2018-03-08 | 2018-03-15 | 2018-03-22 | 2018-03-29 | 2018-04-06 | 2018-04-13 | 2018-04-20 | 2018-04-27 | 2018-05-04 | 2018-05-11 | 2018-05-18 | 2018-05-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_89026.2 | NR_20.0_89026.1 | 2.118 | (4) 5KRG|1|A+5KRG|1|B, 5KRG|1|C+5KRG|1|D, 5L00|1|A+5L00|1|B, 5L00|1|C+5L00|1|D | (1) 5V0H|1|A+5V0H|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_20.0_89026.2 | NR_20.0_16232.1 | 3.24 | (5) 5KRG|1|A+5KRG|1|B, 5KRG|1|C+5KRG|1|D, 5L00|1|A+5L00|1|B, 5L00|1|C+5L00|1|D, 5V0H|1|A+5V0H|1|B | (0) | (3) 6C8M|1|A+6C8M|1|B, 6C8N|1|A+6C8N|1|B, 6C8O|1|A+6C8O|1|B |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 5L00|1|A+ 5L00|1|B | Self-complimentary RNA 15mer binding with GMP monomers | X-RAY DIFFRACTION | 1.25 | 13 | |
| 2 | 5L00|1|C+ 5L00|1|D | Self-complimentary RNA 15mer binding with GMP monomers | X-RAY DIFFRACTION | 1.25 | 13 | |
| 3 | 5KRG|1|A+ 5KRG|1|B | RNA 15mer duplex binding with PZG monomer | X-RAY DIFFRACTION | 1.6 | 11 | |
| 4 | 5KRG|1|C+ 5KRG|1|D | RNA 15mer duplex binding with PZG monomer | X-RAY DIFFRACTION | 1.6 | 11 | |
| 5 | 5V0H|1|A+ 5V0H|1|B | RNA duplex with 2-MeImpG analogue bound-one binding site | X-RAY DIFFRACTION | 1.9 | 11 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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