#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14WQ1|1|3K (rep)Transfer RNAtRNA-TyrEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.X-ray diffraction3.12015-06-10
24WU1|1|3LTransfer RNAtRNA-TyrEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-siteX-ray diffraction3.22015-06-10
34WQ1|1|1KTransfer RNAtRNA-Tyr, mRNAEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.X-ray diffraction3.12015-06-10
44WU1|1|3KTransfer RNAtRNA-TyrEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-siteX-ray diffraction3.22015-06-10
54V8D|1|CDTRNA-TYRStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-ray diffraction32014-07-09
64WQ1|1|3LTransfer RNAtRNA-TyrEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.X-ray diffraction3.12015-06-10
74WR6|1|3KTransfer RNAtRNA-TyrEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.X-ray diffraction3.052015-06-10
84WRA|1|3KTransfer RNAtRNA-TyrEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.X-ray diffraction3.052015-06-10
94WU1|1|2LTransfer RNAtRNA-Tyr, mRNAEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-siteX-ray diffraction3.22015-06-10
104WR6|1|3LTransfer RNAtRNA-TyrEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.X-ray diffraction3.052015-06-10
114WR6|1|1KTransfer RNAtRNA-Tyr, mRNAEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.X-ray diffraction3.052015-06-10
124V8D|1|ADTRNA-TYRStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-ray diffraction32014-07-09
134WU1|1|2KTransfer RNAtRNA-Tyr, mRNAEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-siteX-ray diffraction3.22015-06-10
144WRA|1|1KTransfer RNAtRNA-Tyr, mRNAEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.X-ray diffraction3.052015-06-10
154WRA|1|3LTransfer RNAtRNA-TyrEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.X-ray diffraction3.052015-06-10
164V8D|1|ABTRNA-TYR, MRNAStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-ray diffraction32014-07-09
174WQ1|1|1LTransfer RNAtRNA-Tyr, mRNAEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.X-ray diffraction3.12015-06-10
184V8E|1|BDTRNA-TYRCrystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-ray diffraction3.32014-07-09
194WR6|1|1LTransfer RNAtRNA-Tyr, mRNAEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.X-ray diffraction3.052015-06-10
204V8E|1|DDTRNA-TYRCrystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-ray diffraction3.32014-07-09
214V8F|1|CDTRNA-TYRCrystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).X-ray diffraction3.32014-07-09
224V8F|1|BDTRNA-TYRCrystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).X-ray diffraction3.32014-07-09
234WRA|1|1LTransfer RNAtRNA-Tyr, mRNAEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.X-ray diffraction3.052015-06-10
244V8D|1|CBTRNA-TYR, MRNAStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-ray diffraction32014-07-09
254V8E|1|BBTRNA-TYR, MRNACrystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-ray diffraction3.32014-07-09
264V8E|1|DBTRNA-TYR, MRNACrystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-ray diffraction3.32014-07-09
274V8F|1|BBTRNA-TYR, MRNACrystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).X-ray diffraction3.32014-07-09
286N1D|1|BATNTransfer RNAA tRNAEscherichia coliBacteriaRF00005X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid StateX-ray diffraction3.22019-04-03
294V8F|1|CBTRNA-TYR, MRNACrystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).X-ray diffraction3.32014-07-09
306K0B|1|VTransfer RNAtRNAEscherichia coliBacteriaRF00005cryo-EM structure of archaeal Ribonuclease P with mature tRNAElectron microscopy4.32019-06-19
316K0B|1|UTransfer RNAtRNAEscherichia coliBacteriaRF00005cryo-EM structure of archaeal Ribonuclease P with mature tRNAElectron microscopy4.32019-06-19

Release history

Release3.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.963.97
Date2019-06-212019-06-282019-07-052019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-232019-08-282019-09-042019-09-112019-09-192019-09-252019-10-032019-10-092019-10-162019-10-23

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14WU1|1|2LComplex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-siteX-RAY DIFFRACTION3.271
24WU1|1|2KComplex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-siteX-RAY DIFFRACTION3.275
34WQ1|1|1KComplex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.178
44WR6|1|1KComplex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.0578
54WRA|1|1KComplex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.X-RAY DIFFRACTION3.0580
64V8F|1|BBCrystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).X-RAY DIFFRACTION3.384
74V8D|1|ABStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-RAY DIFFRACTION384
84V8E|1|BBCrystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-RAY DIFFRACTION3.384
94V8E|1|DBCrystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-RAY DIFFRACTION3.384
104V8D|1|CBStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-RAY DIFFRACTION384
114V8F|1|CBCrystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).X-RAY DIFFRACTION3.384
124WQ1|1|1LComplex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.167
134WR6|1|1LComplex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.0585
144WRA|1|1LComplex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.X-RAY DIFFRACTION3.0584
156N1D|1|BATNX-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid StateX-RAY DIFFRACTION3.280
164WR6|1|3LComplex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.0585
174WRA|1|3LComplex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.X-RAY DIFFRACTION3.0583
184WU1|1|3LComplex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-siteX-RAY DIFFRACTION3.278
194WQ1|1|3LComplex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.168
204WQ1|1|3KComplex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.167
214WU1|1|3KComplex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-siteX-RAY DIFFRACTION3.278
224WR6|1|3KComplex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.0578
234WRA|1|3KComplex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.X-RAY DIFFRACTION3.0584
244V8D|1|CDStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-RAY DIFFRACTION384
254V8F|1|CDCrystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).X-RAY DIFFRACTION3.384
264V8E|1|DDCrystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-RAY DIFFRACTION3.384
274V8E|1|BDCrystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-RAY DIFFRACTION3.384
284V8F|1|BDCrystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).X-RAY DIFFRACTION3.384
294V8D|1|ADStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-RAY DIFFRACTION384
306K0B|1|Vcryo-EM structure of archaeal Ribonuclease P with mature tRNAELECTRON MICROSCOPY4.383
316K0B|1|Ucryo-EM structure of archaeal Ribonuclease P with mature tRNAELECTRON MICROSCOPY4.383
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