#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. Å#NTsDate
14WQ1|1|3K (rep)Transfer RNAtRNA-TyrEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.X-ray diffraction3.1742015-06-10
24WU1|1|3LTransfer RNAtRNA-TyrEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-siteX-ray diffraction3.2852015-06-10
34WQ1|1|1KTransfer RNAmRNA, tRNA-TyrEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.X-ray diffraction3.1852015-06-10
44WU1|1|3KTransfer RNAtRNA-TyrEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-siteX-ray diffraction3.2852015-06-10
54V8D|1|CDTRNA-TYRStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-ray diffraction3852014-07-09
64WQ1|1|3LTransfer RNAtRNA-TyrEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.X-ray diffraction3.1752015-06-10
74WR6|1|3KTransfer RNAtRNA-TyrEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.X-ray diffraction3.05852015-06-10
84WRA|1|3KTransfer RNAtRNA-TyrEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.X-ray diffraction3.05852015-06-10
94WU1|1|2LTransfer RNAmRNA, tRNA-TyrEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-siteX-ray diffraction3.2782015-06-10
104WR6|1|3LTransfer RNAtRNA-TyrEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.X-ray diffraction3.05852015-06-10
114WR6|1|1KTransfer RNAmRNA, tRNA-TyrEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.X-ray diffraction3.05852015-06-10
124V8D|1|ADTRNA-TYRStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-ray diffraction3852014-07-09
134WU1|1|2KTransfer RNAmRNA, tRNA-TyrEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-siteX-ray diffraction3.2822015-06-10
144WRA|1|1KTransfer RNAmRNA, tRNA-TyrEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.X-ray diffraction3.05852015-06-10
154WRA|1|3LTransfer RNAtRNA-TyrEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.X-ray diffraction3.05852015-06-10
164V8D|1|ABMRNA, TRNA-TYRStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-ray diffraction3852014-07-09
174WQ1|1|1LTransfer RNAmRNA, tRNA-TyrEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.X-ray diffraction3.1742015-06-10
184V8E|1|BDTRNA-TYRCrystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-ray diffraction3.3852014-07-09
194WR6|1|1LTransfer RNAmRNA, tRNA-TyrEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.X-ray diffraction3.05852015-06-10
204V8E|1|DDTRNA-TYRCrystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-ray diffraction3.3852014-07-09
214V8F|1|CDTRNA-TYRCrystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).X-ray diffraction3.3852014-07-09
224V8F|1|BDTRNA-TYRCrystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).X-ray diffraction3.3852014-07-09
234WRA|1|1LTransfer RNAmRNA, tRNA-TyrEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.X-ray diffraction3.05852015-06-10
244V8D|1|CBMRNA, TRNA-TYRStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-ray diffraction3852014-07-09
254V8E|1|BBMRNA, TRNA-TYRCrystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-ray diffraction3.3852014-07-09
264V8E|1|DBMRNA, TRNA-TYRCrystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-ray diffraction3.3852014-07-09
274V8F|1|BBMRNA, TRNA-TYRCrystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).X-ray diffraction3.3852014-07-09
286N1D|1|BATNTransfer RNAA tRNAEscherichia coliBacteriaRF00005X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid StateX-ray diffraction3.2852019-04-03
294V8F|1|CBMRNA, TRNA-TYRCrystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).X-ray diffraction3.3852014-07-09

Release history

Release3.983.993.1003.1013.1023.1033.1043.1053.1063.1073.1083.1093.1103.1113.1123.1133.1143.1153.1163.1173.1183.1193.1203.1213.1223.1233.1243.1253.1263.1273.1283.1293.1303.1313.1323.1333.1343.1353.1363.1373.1383.1393.1403.1413.1423.1433.1443.1453.1463.1473.1483.1493.1503.1513.1523.1533.1543.1553.1563.1573.1583.1593.1603.1613.1623.1633.1643.1653.1663.1673.1683.1693.1703.1713.1723.1733.1743.1753.1763.1773.1783.1793.1803.1813.1823.1833.1843.1853.1863.1873.1883.1893.1903.1913.1923.1933.1943.1953.1963.1973.1983.1993.2003.2013.2023.2033.2043.2053.2063.2073.2083.2093.2103.2113.2123.2133.2143.2153.2163.2173.2183.2193.2203.2213.2223.2233.2243.2253.2263.2273.2283.2293.2303.2313.2323.2333.2343.2353.2363.2373.2383.2393.2403.2413.2423.2433.2443.2453.2463.2473.2483.2493.2503.2513.2523.2533.2543.2553.2563.2573.2583.2593.2603.2613.2623.2633.2643.2653.2663.2673.2683.2693.2703.2713.2723.2733.2743.2753.2763.2773.2783.2793.2803.2813.2823.2833.2843.2853.2863.2873.2883.2893.2903.2913.2923.2933.2943.2953.2963.2973.2983.2993.3003.3013.3023.3033.3043.3053.3063.3073.3083.3093.3103.3113.3123.3133.3143.3153.3163.3173.3183.3193.3203.3213.3223.3233.3243.3253.3263.3273.3283.3293.3303.3313.3323.3333.3343.3353.3363.3373.338
Date2019-10-302019-11-062019-11-132019-11-202019-11-272019-12-042019-12-112019-12-182019-12-252020-01-012020-01-082020-01-152020-01-222020-01-292020-02-052020-02-122020-02-192020-02-262020-03-042020-03-112020-03-182020-03-252020-04-012020-04-082020-04-152020-04-222020-04-292020-05-062020-05-132020-05-202020-05-272020-06-032020-06-102020-06-172020-06-242020-07-012020-07-082020-07-152020-07-222020-07-292020-08-052020-08-122020-08-192020-08-262020-09-022020-09-092020-09-162020-09-232020-09-302020-10-072020-10-142020-10-212020-10-282020-11-042020-11-112020-11-182020-11-252020-12-022020-12-092020-12-162020-12-232020-12-302021-01-062021-01-132021-01-202021-01-272021-02-032021-02-102021-02-172021-02-242021-03-032021-03-102021-03-172021-03-242021-03-312021-04-072021-04-142021-04-212021-04-282021-05-052021-05-122021-05-192021-05-262021-06-022021-06-092021-06-162021-06-232021-06-302021-07-072021-07-142021-07-212021-07-282021-08-042021-08-112021-08-182021-08-252021-09-012021-09-082021-09-152021-09-222021-09-292021-10-062021-10-132021-10-202021-10-272021-11-032021-11-102021-11-172021-11-242021-12-012021-12-082021-12-152021-12-222021-12-292022-01-052022-01-122022-01-192022-01-262022-02-022022-02-092022-02-162022-02-232022-03-022022-03-092022-03-162022-03-232022-03-302022-04-062022-04-132022-04-202022-04-272022-05-042022-05-112022-05-182022-05-252022-06-012022-06-082022-06-152022-06-222022-06-292022-07-062022-07-132022-07-202022-07-272022-08-032022-08-102022-08-172022-08-242022-08-312022-09-072022-09-142022-09-212022-09-282022-10-052022-10-122022-10-192022-10-262022-11-022022-11-092022-11-162022-11-232022-11-302022-12-072022-12-142022-12-212022-12-282023-01-042023-01-112023-01-182023-01-252023-02-012023-02-082023-02-152023-02-222023-03-012023-03-082023-03-152023-03-222023-03-292023-04-052023-04-122023-04-192023-04-262023-05-032023-05-102023-05-172023-05-242023-05-312023-06-072023-06-142023-06-212023-06-282023-07-052023-07-122023-07-192023-07-262023-08-022023-08-092023-08-162023-08-232023-08-302023-09-062023-09-132023-09-202023-09-272023-10-042023-10-112023-10-182023-10-252023-11-012023-11-082023-11-152023-11-242023-11-292023-12-062023-12-132023-12-202023-12-272024-01-032024-01-102024-01-172024-01-242024-01-312024-02-072024-02-142024-02-212024-02-282024-03-062024-03-132024-03-202024-03-272024-04-032024-04-102024-04-172024-04-242024-05-012024-05-082024-05-152024-05-222024-05-292024-06-05

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolution#NTs
14WQ1|1|3LComplex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.175
24WRA|1|3KComplex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.X-RAY DIFFRACTION3.0585
34WR6|1|3KComplex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.0585
44WQ1|1|3KComplex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.174
54WU1|1|3KComplex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-siteX-RAY DIFFRACTION3.285
64V8D|1|ADStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-RAY DIFFRACTION385
74V8F|1|BDCrystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).X-RAY DIFFRACTION3.385
84V8E|1|BDCrystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-RAY DIFFRACTION3.385
94V8E|1|DDCrystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-RAY DIFFRACTION3.385
104V8F|1|CDCrystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).X-RAY DIFFRACTION3.385
114V8D|1|CDStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-RAY DIFFRACTION385
124WU1|1|3LComplex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-siteX-RAY DIFFRACTION3.285
134WRA|1|3LComplex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.X-RAY DIFFRACTION3.0585
144WR6|1|3LComplex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.0585
156N1D|1|BATNX-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid StateX-RAY DIFFRACTION3.285
164WQ1|1|1KComplex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.185
174WR6|1|1KComplex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.0585
184WRA|1|1KComplex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.X-RAY DIFFRACTION3.0585
194WRA|1|1LComplex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.X-RAY DIFFRACTION3.0585
204WR6|1|1LComplex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.0585
214WQ1|1|1LComplex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.174
224V8F|1|BBCrystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).X-RAY DIFFRACTION3.385
234V8D|1|ABStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-RAY DIFFRACTION385
244V8E|1|DBCrystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-RAY DIFFRACTION3.385
254V8E|1|BBCrystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).X-RAY DIFFRACTION3.385
264V8F|1|CBCrystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).X-RAY DIFFRACTION3.385
274V8D|1|CBStructure analysis of ribosomal decoding (cognate tRNA-tyr complex).X-RAY DIFFRACTION385
284WU1|1|2KComplex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-siteX-RAY DIFFRACTION3.282
294WU1|1|2LComplex of 70S ribosome with tRNA-Tyr and mRNA with G-U mismatch in the second position in the P-siteX-RAY DIFFRACTION3.278

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.3847 s