BGSU RNA Site //

Equivalence class NR_20.0_90506.16 Obsolete

#IFECompound(s)RNA source organismTitleMethodResolutionDate
14V88|1|A5+ 4V88|1|A8 (rep)25S rRNA, 5.8S rRNA??The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION32014-07-09
24V8T|1|5+ 4V8T|1|825S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNA??Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1ELECTRON MICROSCOPY8.12014-07-09
34V88|1|A1+ 4V88|1|A425S rRNA, 5.8S rRNA??The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION32014-07-09
44U4Q|1|5+ 4U4Q|1|825S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
54U3U|1|1+ 4U3U|1|425S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.92014-10-22
64U4R|1|1+ 4U4R|1|425S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.82014-10-22
74U4R|1|5+ 4U4R|1|825S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.82014-10-22
84V8Y|1|B5+ 4V8Y|1|B825S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNA??Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexELECTRON MICROSCOPY4.32014-07-09
94V8Z|1|B5+ 4V8Z|1|B825S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNA??Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexELECTRON MICROSCOPY6.62014-07-09
104U52|1|5+ 4U52|1|825S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
114U4U|1|1+ 4U4U|1|425S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
124U4Z|1|1+ 4U4Z|1|425S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
135LYB|1|5+ 5LYB|1|825S rRNA, 5.8S rRNA, aminoacyl-tRNA fragment ACCPmn??Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.252016-11-23
145DGV|1|5+ 5DGV|1|825S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(8AN)*(Pro)*(Pro))-3')??Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.12016-12-14
154U4Q|1|1+ 4U4Q|1|425S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
165I4L|1|5+ 5I4L|1|825S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12016-06-22
174U3U|1|5+ 4U3U|1|825S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.92014-10-22
184U3M|1|1+ 4U3M|1|425s rRNA, 5.8s rRNA??Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
194U55|1|1+ 4U55|1|425S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
204U4N|1|1+ 4U4N|1|425S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
214U4U|1|5+ 4U4U|1|825S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
225FCJ|1|5+ 5FCJ|1|825S ribosomal RNA, 5.8S ribosomal RNA??Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.12016-05-11
235DGV|1|1+ 5DGV|1|425S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(8AN)*(Pro)*(Pro))-3')??Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.12016-12-14
244U52|1|1+ 4U52|1|425S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
255DC3|1|5+ 5DC3|1|825S ribosomal RNA, 5.8S ribosomal RNA??Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.252016-06-01
264U4Y|1|5+ 4U4Y|1|825S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
275FCJ|1|1+ 5FCJ|1|425S ribosomal RNA, 5.8S ribosomal RNA??Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.12016-05-11
284U3N|1|5+ 4U3N|1|825S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
295DAT|1|1+ 5DAT|1|425S ribosomal RNA, 5.8S ribosomal RNA??Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.152016-08-31
304U4N|1|5+ 4U4N|1|825S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
315LYB|1|1+ 5LYB|1|425S rRNA, 5.8S rRNA, aminoacyl-tRNA fragment ACCPmn??Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.252016-11-23
324U6F|1|1+ 4U6F|1|425S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
334U50|1|5+ 4U50|1|825S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
344U50|1|1+ 4U50|1|425S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
354U55|1|5+ 4U55|1|825S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
364U3M|1|5+ 4U3M|1|825s rRNA, 5.8s rRNA??Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION32014-10-22
375DGE|1|5+ 5DGE|1|825S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(NA))-3')??Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.452017-01-25
385I4L|1|1+ 5I4L|1|425S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12016-06-22
394U4Z|1|5+ 4U4Z|1|825S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
404U3N|1|1+ 4U3N|1|425S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
414U53|1|5+ 4U53|1|825S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32014-10-22
424U4Y|1|1+ 4U4Y|1|425S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
435FCI|1|1+ 5FCI|1|425S ribosomal RNA, 5.8S ribosomal RNA??Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.42016-05-11
445APO|1|5+ 5APO|1|825S ribosomal RNA, 5.8S ribosomal RNA??Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1ELECTRON MICROSCOPY3.412015-12-16
455MEI|1|AR+ 5MEI|1|AT25S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.52017-06-28
465DAT|1|5+ 5DAT|1|825S ribosomal RNA, 5.8S ribosomal RNA??Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.152016-08-31
475DGE|1|1+ 5DGE|1|425S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(NA))-3')??Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.452017-01-25
484U51|1|1+ 4U51|1|425S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
495DC3|1|1+ 5DC3|1|425S ribosomal RNA, 5.8S ribosomal RNA??Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.252016-06-01
504U6F|1|5+ 4U6F|1|825S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.12014-10-22
514U51|1|5+ 4U51|1|825S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.22014-10-22
525MEI|1|1+ 5MEI|1|425S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.52017-06-28
535TGA|1|1+ 5TGA|1|425S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.32016-11-23
545DGF|1|5+ 5DGF|1|825S ribosomal RNA, 5.8S ribosomal RNA??Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.32016-12-14
555DGF|1|1+ 5DGF|1|425S ribosomal RNA, 5.8S ribosomal RNA??Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.32016-12-14
564U53|1|1+ 4U53|1|425S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.32014-10-22
575TGA|1|5+ 5TGA|1|825S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.32016-11-23
584U56|1|1+ 4U56|1|425S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.452014-10-22
595FCI|1|5+ 5FCI|1|825S ribosomal RNA, 5.8S ribosomal RNA??Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.42016-05-11
604U56|1|5+ 4U56|1|825S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.452014-10-22
615TGM|1|1+ 5TGM|1|425S ribosomal RNA, 5.8S ribosomal RNA, Peptidyl-tRNA analog ACCA-Leu-Phe??Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.52017-01-18
625APN|1|5+ 5APN|1|825S rRNA, 5.8S rRNA??Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1ELECTRON MICROSCOPY3.912015-12-16
635TGM|1|5+ 5TGM|1|825S ribosomal RNA, 5.8S ribosomal RNA, Peptidyl-tRNA analog ACCA-Leu-Phe??Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.52017-01-18
645T6R|1|A+ 5T6R|1|C25S Ribosomal RNA, 5.8S Ribosomal RNA??Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 ComplexELECTRON MICROSCOPY4.22017-02-08
655T62|1|A+ 5T62|1|C25S Ribosomal RNA, 5.8S Ribosomal RNA??Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 ComplexELECTRON MICROSCOPY3.12017-02-08
665MC6|1|BQ+ 5MC6|1|BS25S ribosomal RNA, 5.8S ribosomal RNA??Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiaeELECTRON MICROSCOPY3.82017-01-18
674U4O|1|5+ 4U4O|1|825S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.62014-10-22
685JUP|1|B+ 5JUP|1|C25S ribosomal RNA, 5.8S ribosomal RNA??Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)ELECTRON MICROSCOPY3.52016-10-05
695M1J|1|14+ 5M1J|1|4425S ribosomal RNA, 5.8S ribosomal RNA??Nonstop ribosomal complex bound with Dom34 and Hbs1ELECTRON MICROSCOPY3.32017-01-18
704U4O|1|1+ 4U4O|1|425S ribosomal RNA, 5.8S ribosomal RNA??Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.62014-10-22
715H4P|1|1+ 5H4P|1|425S ribosomal RNA, 5.8S ribosomal RNA??Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1ELECTRON MICROSCOPY3.072017-01-25
723J77|1|2S+ 3J77|1|8S25S ribosomal RNA, 5.8S ribosomal RNA??Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)ELECTRON MICROSCOPY6.22014-08-06
735JUU|1|B+ 5JUU|1|C25S ribosomal RNA, 5.8S ribosomal RNA??Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)ELECTRON MICROSCOPY42016-10-05
743JCT|1|1+ 3JCT|1|2RDN25-1 rRNA, RDN58-1 rRNA??Cryo-em structure of eukaryotic pre-60S ribosomal subunitsELECTRON MICROSCOPY3.082016-06-01
753J78|1|2S+ 3J78|1|8S25S ribosomal RNA, 5.8S ribosomal RNA??Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)ELECTRON MICROSCOPY6.32014-08-06
765JUT|1|B+ 5JUT|1|C25S ribosomal RNA, 5.8S ribosomal RNA??Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)ELECTRON MICROSCOPY42016-10-05
773J6Y|1|2S+ 3J6Y|1|8S25S ribosomal RNA, 5.8S ribosomal RNA??S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)ELECTRON MICROSCOPY6.12014-06-11
783J6X|1|2S+ 3J6X|1|8S25S ribosomal RNA, 5.8S ribosomal RNA??S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)ELECTRON MICROSCOPY6.12014-06-11
794V6I|1|DA+ 4V6I|1|DB25S rRNA, 5.8S rRNA??Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosomeELECTRON MICROSCOPY8.82014-07-09
805GAK|1|1+ 5GAK|1|425S rRNA, 5.8S rRNA??Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5AELECTRON MICROSCOPY3.882016-02-24
815JUO|1|B+ 5JUO|1|C25S ribosomal RNA, 5.8S ribosomal RNA??Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)ELECTRON MICROSCOPY42016-10-05
825JUS|1|B+ 5JUS|1|C25S ribosomal RNA, 5.8S ribosomal RNA??Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)ELECTRON MICROSCOPY4.22016-10-05
834V7R|1|B1+ 4V7R|1|B325S ribosomal RNA, 5.8S ribosomal RNA??Yeast 80S ribosome.X-RAY DIFFRACTION42014-07-09
844V7R|1|D1+ 4V7R|1|D325S ribosomal RNA, 5.8S ribosomal RNA??Yeast 80S ribosome.X-RAY DIFFRACTION42014-07-09
855JCS|1|x25S ribosomal RNASaccharomyces cerevisiaeCRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLEELECTRON MICROSCOPY9.52016-11-16
865FL8|1|x25S ribosomal RNASaccharomyces cerevisiaeCRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLEELECTRON MICROSCOPY9.52015-12-02
874V7F|1|125S ribosomal RNASaccharomyces cerevisiaeArx1 pre-60S particle.ELECTRON MICROSCOPY8.72014-07-09

Release history

Release2.1352.1362.1372.138
Date2017-07-042017-07-102017-07-152017-07-26

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_90506.16NR_20.0_90506.152.135(85) 4U50|1|5+4U50|1|8, 5JUU|1|B+5JUU|1|C, 4V7R|1|D1+4V7R|1|D3, 4U3U|1|5+4U3U|1|8, 5DGV|1|1+5DGV|1|4, 4U50|1|1+4U50|1|4, 5JUT|1|B+5JUT|1|C, 4V7R|1|B1+4V7R|1|B3, 4U3U|1|1+4U3U|1|4, 5DGF|1|5+5DGF|1|8, 4U4Z|1|5+4U4Z|1|8, 5JUS|1|B+5JUS|1|C, 4V7F|1|1, 4U3N|1|5+4U3N|1|8, 5DGF|1|1+5DGF|1|4, 4U4Z|1|1+4U4Z|1|4, 5JUP|1|B+5JUP|1|C, 4V6I|1|DA+4V6I|1|DB, 4U3N|1|1+4U3N|1|4, 5DGE|1|5+5DGE|1|8, 4U4Y|1|5+4U4Y|1|8, 5JUO|1|B+5JUO|1|C, 4U6F|1|5+4U6F|1|8, 4U3M|1|5+4U3M|1|8, 5DGE|1|1+5DGE|1|4, 4U4Y|1|1+4U4Y|1|4, 5JCS|1|x, 4U6F|1|1+4U6F|1|4, 4U3M|1|1+4U3M|1|4, 5DC3|1|5+5DC3|1|8, 4U4U|1|5+4U4U|1|8, 5I4L|1|5+5I4L|1|8, 4U56|1|5+4U56|1|8, 3JCT|1|1+3JCT|1|2, 5DC3|1|1+5DC3|1|4, 4U4U|1|1+4U4U|1|4, 5I4L|1|1+5I4L|1|4, 4U56|1|1+4U56|1|4, 5TGM|1|1+5TGM|1|4, 5TGM|1|5+5TGM|1|8, 3J78|1|2S+3J78|1|8S, 5DAT|1|5+5DAT|1|8, 4U4R|1|5+4U4R|1|8, 5H4P|1|1+5H4P|1|4, 4U55|1|5+4U55|1|8, 5TGA|1|5+5TGA|1|8, 3J77|1|2S+3J77|1|8S, 5DAT|1|1+5DAT|1|4, 4U4R|1|1+4U4R|1|4, 5GAK|1|1+5GAK|1|4, 4U55|1|1+4U55|1|4, 5TGA|1|1+5TGA|1|4, 3J6Y|1|2S+3J6Y|1|8S, 5APO|1|5+5APO|1|8, 4U4Q(2) 5MEI|1|1+5MEI|1|4, 5MEI|1|AR+5MEI|1|AT(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_90506.16NR_20.0_90506.172.139(87) 5T6R|1|A+5T6R|1|C, 4V7R|1|D1+4V7R|1|D3, 3J77|1|2S+3J77|1|8S, 5DAT|1|1+5DAT|1|4, 4U3U|1|5+4U3U|1|8, 5DGV|1|1+5DGV|1|4, 4U4R|1|5+4U4R|1|8, 5H4P|1|1+5H4P|1|4, 4U50|1|5+4U50|1|8, 5JUU|1|B+5JUU|1|C, 4U55|1|5+4U55|1|8, 5T62|1|A+5T62|1|C, 4V7R|1|B1+4V7R|1|B3, 3J6Y|1|2S+3J6Y|1|8S, 5APO|1|5+5APO|1|8, 4U3U|1|1+4U3U|1|4, 5DGF|1|5+5DGF|1|8, 4U4R|1|1+4U4R|1|4, 5GAK|1|1+5GAK|1|4, 4U50|1|1+4U50|1|4, 5JUT|1|B+5JUT|1|C, 4U55|1|1+4U55|1|4, 5MEI|1|AR+5MEI|1|AT, 4V7F|1|1, 3J6X|1|2S+3J6X|1|8S, 5APN|1|5+5APN|1|8, 4U3N|1|5+4U3N|1|8, 5DGF|1|1+5DGF|1|4, 4U4Q|1|5+4U4Q|1|8, 5FL8|1|x, 4U4Z|1|5+4U4Z|1|8, 5JUS|1|B+5JUS|1|C, 4U53|1|5+4U53|1|8, 5MEI|1|1+5MEI|1|4, 4V6I|1|DA+4V6I|1|DB, 4V8Z|1|B5+4V8Z|1|B8, 4U3N|1|1+4U3N|1|4, 5DGE|1|5+5DGE|1|8, 4U4Q|1|1+4U4Q|1|4, 5FCJ|1|5+5FCJ|1|8, 4U4Z|1|1+4U4Z|1|4, 5JUP|1|B+5JUP|1|C, 4U53|1|1+4U53|1|4, 4U6F|1|5+4U6F|1|8, 4V8Y|1|B5+4V8Y|1|B8, 4U3M|1|5+4U3M|1|8, 5DGE|1|1+5DGE|1|4, 4U4O|1|5+4U4O|1|8, 5FCJ|1|1+5FCJ|1|4, 4U4Y|1|5+4U4Y|1|8, 5JUO|1|B+5JUO|1|C, 4U52|1|5+4U52|1|8, 5MC6|1|BQ+5MC6|1|BS, 5TGM|1|5+5TGM|1(0) (2) 5TBW|1|1+5TBW|1|4, 5TBW|1|AR+5TBW|1|AT

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14V7F|1|1Arx1 pre-60S particle.ELECTRON MICROSCOPY8.73394
24V6I|1|DA+4V6I|1|DBLocalization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosomeELECTRON MICROSCOPY8.83354
35M1J|1|14+5M1J|1|44Nonstop ribosomal complex bound with Dom34 and Hbs1ELECTRON MICROSCOPY3.33295
45DGF|1|1+5DGF|1|4Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.33149
55DAT|1|1+5DAT|1|4Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.153149
65MEI|1|1+5MEI|1|4Crystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.53149
74U50|1|1+4U50|1|4Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23149
84U53|1|1+4U53|1|4Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33149
94U51|1|1+4U51|1|4Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23149
104U6F|1|1+4U6F|1|4Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13149
114U52|1|1+4U52|1|4Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
124U4Q|1|1+4U4Q|1|4Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
134U4U|1|1+4U4U|1|4Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
144U4N|1|1+4U4N|1|4Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13149
154U55|1|1+4U55|1|4Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23149
164U4Z|1|1+4U4Z|1|4Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13149
174U3N|1|1+4U3N|1|4Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
184V88|1|A1+4V88|1|A4The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION33149
194U4R|1|1+4U4R|1|4Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.83149
204U3U|1|1+4U3U|1|4Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.93149
214U3M|1|1+4U3M|1|4Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION33149
224U4Y|1|1+4U4Y|1|4Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23149
234U56|1|1+4U56|1|4Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.453149
245DC3|1|1+5DC3|1|4Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.253149
255DGE|1|1+5DGE|1|4Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.453149
265DGV|1|1+5DGV|1|4Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.13148
275TGM|1|1+5TGM|1|4Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.53149
285TGA|1|1+5TGA|1|4Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.33151
295LYB|1|1+5LYB|1|4Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.253149
305I4L|1|1+5I4L|1|4Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13149
315FCJ|1|1+5FCJ|1|4Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.13149
325FCI|1|1+5FCI|1|4Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.43149
334U4O|1|1+4U4O|1|4Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.63149
345MC6|1|BQ+5MC6|1|BSCryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiaeELECTRON MICROSCOPY3.83165
355GAK|1|1+5GAK|1|4Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5AELECTRON MICROSCOPY3.883165
365H4P|1|1+5H4P|1|4Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1ELECTRON MICROSCOPY3.073091
375T6R|1|A+5T6R|1|CNmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 ComplexELECTRON MICROSCOPY4.23204
385T62|1|A+5T62|1|CNmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 ComplexELECTRON MICROSCOPY3.13200
395MEI|1|AR+5MEI|1|ATCrystal structure of Agelastatin A bound to the 80S ribosomeX-RAY DIFFRACTION3.53149
405DC3|1|5+5DC3|1|8Complex of yeast 80S ribosome with non-modified eIF5AX-RAY DIFFRACTION3.253169
415DAT|1|5+5DAT|1|8Complex of yeast 80S ribosome with hypusine-containing eIF5AX-RAY DIFFRACTION3.153169
425DGF|1|5+5DGF|1|8Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.33169
435DGE|1|5+5DGE|1|8Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosomeX-RAY DIFFRACTION3.453150
445DGV|1|5+5DGV|1|8Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analogX-RAY DIFFRACTION3.13149
454U6F|1|5+4U6F|1|8Crystal structure of T-2 toxin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13150
464U3M|1|5+4U3M|1|8Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
474U51|1|5+4U51|1|8Crystal structure of Narciclasine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
484U4U|1|5+4U4U|1|8Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
494U4Q|1|5+4U4Q|1|8Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
504U52|1|5+4U52|1|8Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION33150
514U50|1|5+4U50|1|8Crystal structure of Verrucarin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
524U53|1|5+4U53|1|8Crystal structure of Deoxynivalenol bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.33150
534U4Z|1|5+4U4Z|1|8Crystal structure of Phyllanthoside bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13150
544U55|1|5+4U55|1|8Crystal structure of Cryptopleurine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
554U4N|1|5+4U4N|1|8Crystal structure of Edeine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13150
565LYB|1|5+5LYB|1|8Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmnX-RAY DIFFRACTION3.253150
574V8T|1|5+4V8T|1|8Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1ELECTRON MICROSCOPY8.13150
584V88|1|A5+4V88|1|A8The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION33150
594U3U|1|5+4U3U|1|8Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.93150
604U4R|1|5+4U4R|1|8Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.83150
614U3N|1|5+4U3N|1|8Crystal structure of CCA trinucleotide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23151
624U4Y|1|5+4U4Y|1|8Crystal structure of Pactamycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.23150
634U56|1|5+4U56|1|8Crystal structure of Blasticidin S bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.453150
645FCI|1|5+5FCI|1|8Structure of the vacant uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.43150
655FCJ|1|5+5FCJ|1|8Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosomeX-RAY DIFFRACTION3.13150
664U4O|1|5+4U4O|1|8Crystal structure of Geneticin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.63150
675TGM|1|5+5TGM|1|8Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.53150
685TGA|1|5+5TGA|1|8Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-ProX-RAY DIFFRACTION3.33152
695I4L|1|5+5I4L|1|8Crystal structure of Amicoumacin A bound to the yeast 80S ribosomeX-RAY DIFFRACTION3.13150
704V8Z|1|B5+4V8Z|1|B8Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexELECTRON MICROSCOPY6.63147
714V8Y|1|B5+4V8Y|1|B8Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation ComplexELECTRON MICROSCOPY4.33147
725JUO|1|B+5JUO|1|CSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)ELECTRON MICROSCOPY43309
735JUS|1|B+5JUS|1|CSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)ELECTRON MICROSCOPY4.23309
745JUP|1|B+5JUP|1|CSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)ELECTRON MICROSCOPY3.53309
755JUU|1|B+5JUU|1|CSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)ELECTRON MICROSCOPY43307
765JUT|1|B+5JUT|1|CSaccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)ELECTRON MICROSCOPY43309
773J6X|1|2S+3J6X|1|8SS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)ELECTRON MICROSCOPY6.13308
783J6Y|1|2S+3J6Y|1|8SS. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)ELECTRON MICROSCOPY6.13308
795APO|1|5+5APO|1|8Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1ELECTRON MICROSCOPY3.413092
805APN|1|5+5APN|1|8Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1ELECTRON MICROSCOPY3.913092
813J78|1|2S+3J78|1|8SStructures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)ELECTRON MICROSCOPY6.33302
823J77|1|2S+3J77|1|8SStructures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)ELECTRON MICROSCOPY6.23287
834V7R|1|B1+4V7R|1|B3Yeast 80S ribosome.X-RAY DIFFRACTION43206
844V7R|1|D1+4V7R|1|D3Yeast 80S ribosome.X-RAY DIFFRACTION43206
855FL8|1|xCRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLEELECTRON MICROSCOPY9.52779
865JCS|1|xCRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLEELECTRON MICROSCOPY9.53394
873JCT|1|1+3JCT|1|2Cryo-em structure of eukaryotic pre-60S ribosomal subunitsELECTRON MICROSCOPY3.083058