| 1 | 5TBW|1|1+ 5TBW|1|4 (rep) | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2017-07-26 |
| 2 | 8CCS|1|AA+ 8CCS|1|CC | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | 80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex | Electron microscopy | 1.97 | 2023-09-20 |
| 3 | 5TBW|1|AR+ 5TBW|1|AT | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2017-07-26 |
| 4 | 8CDR|1|AA+ 8CDR|1|CC | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin | Electron microscopy | 2.04 | 2023-09-20 |
| 5 | 4V88|1|A5+ 4V88|1|A8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-ray diffraction | 3 | 2014-07-09 |
| 6 | 8CEH|1|AA+ 8CEH|1|CC | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin | Electron microscopy | 2.05 | 2023-09-20 |
| 7 | 4V88|1|A1+ 4V88|1|A4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-ray diffraction | 3 | 2014-07-09 |
| 8 | 8EVT|1|A1+ 8EVT|1|A4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8 S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map | Electron microscopy | 2.2 | 2023-09-06 |
| 9 | 7OSA|1|25S+ 7OSA|1|58S | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-ray diffraction | 3 | 2021-12-08 |
| 10 | 8CGN|1|AA+ 8CGN|1|CC | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Non-rotated 80S S. cerevisiae ribosome with ligands | Electron microscopy | 2.28 | 2023-09-20 |
| 11 | 5I4L|1|5+ 5I4L|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2016-06-22 |
| 12 | 8P8N|1|A+ 8P8N|1|LD | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Mouse RPL39 integrated into the yeast 60S ribosomal subunit | Electron microscopy | 2.15 | 2024-06-12 |
| 13 | 5I4L|1|1+ 5I4L|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Amicoumacin A bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2016-06-22 |
| 14 | 7ZW0|1|LA+ 7ZW0|1|LD | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA (RDN25-1), 5.8S ribosomal RNA (RDN58-1) | Saccharomyces cerevisiae W303 | Eukarya | RF02543 + RF00002 | FAP-80S Complex - Rotated state | Electron microscopy | 2.4 | 2022-10-05 |
| 15 | 5MEI|1|AR+ 5MEI|1|AT | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Agelastatin A bound to the 80S ribosome | X-ray diffraction | 3.5 | 2017-06-28 |
| 16 | 8AGX|1|f+ 8AGX|1|i | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast RQC complex in state with the RING domain of Ltn1 in the IN position | Electron microscopy | 2.4 | 2023-03-08 |
| 17 | 5MEI|1|1+ 5MEI|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Agelastatin A bound to the 80S ribosome | X-ray diffraction | 3.5 | 2017-06-28 |
| 18 | 7TOP|1|A25S+ 7TOP|1|A58S | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20 | Electron microscopy | 2.4 | 2022-05-25 |
| 19 | 6HHQ|1|AR+ 6HHQ|1|AT | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of compound C45 bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2019-02-20 |
| 20 | 8P8U|1|A+ 8P8U|1|LD | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast 60S ribosomal subunit | Electron microscopy | 2.23 | 2024-06-12 |
| 21 | 6HHQ|1|1+ 6HHQ|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of compound C45 bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2019-02-20 |
| 22 | 8EVP|1|A1+ 8EVP|1|A4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8 S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I | Electron microscopy | 2.38 | 2023-09-06 |
| 23 | 5OBM|1|5+ 5OBM|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Gentamicin bound to the yeast 80S ribosome | X-ray diffraction | 3.4 | 2017-12-13 |
| 24 | 8BN3|1|1 | Large subunit ribosomal RNA | 25S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 | Yeast 80S, ES7s delta, eIF5A, Stm1 containing | Electron microscopy | 2.4 | 2024-01-10 |
| 25 | 5OBM|1|1+ 5OBM|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Gentamicin bound to the yeast 80S ribosome | X-ray diffraction | 3.4 | 2017-12-13 |
| 26 | 8AAF|1|f+ 8AAF|1|i | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast RQC complex in state G | Electron microscopy | 2.5 | 2023-03-08 |
| 27 | 5LYB|1|5+ 5LYB|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA, aminoacyl-tRNA fragment ACCPmn | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-ray diffraction | 3.25 | 2016-11-23 |
| 28 | 8EWC|1|A1+ 8EWC|1|A4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8 S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II | Electron microscopy | 2.45 | 2023-09-06 |
| 29 | 5NDV|1|1+ 5NDV|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Paromomycin bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 2017-12-13 |
| 30 | 8CIV|1|AA+ 8CIV|1|CC | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin | Electron microscopy | 2.47 | 2023-09-20 |
| 31 | 5ON6|1|1+ 5ON6|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of haemanthamine bound to the 80S ribosome | X-ray diffraction | 3.1 | 2018-02-28 |
| 32 | 7ZUX|1|5+ 7ZUX|1|3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Collided ribosome in a disome unit from S. cerevisiae | Electron microscopy | 2.5 | 2023-02-22 |
| 33 | 5LYB|1|1+ 5LYB|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA, aminoacyl-tRNA fragment ACCPmn | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn | X-ray diffraction | 3.25 | 2016-11-23 |
| 34 | 7UOO|1|1+ 7UOO|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae BY4741 | Eukarya | RF02543 + RF00002 | Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state | Electron microscopy | 2.34 | 2023-03-15 |
| 35 | 5ON6|1|AR+ 5ON6|1|AT | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of haemanthamine bound to the 80S ribosome | X-ray diffraction | 3.1 | 2018-02-28 |
| 36 | 7V08|1|1+ 7V08|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae BY4741 | Eukarya | RF02543 + RF00002 | Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain | Electron microscopy | 2.36 | 2023-03-15 |
| 37 | 7OSM|1|25S+ 7OSM|1|58S | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands | X-ray diffraction | 3 | 2021-12-08 |
| 38 | 7UQB|1|1+ 7UQB|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae BY4741 | Eukarya | RF02543 + RF00002 | Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4 | Electron microscopy | 2.43 | 2023-03-15 |
| 39 | 5NDV|1|5+ 5NDV|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Paromomycin bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 2017-12-13 |
| 40 | 7UQZ|1|1+ 7UQZ|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae BY4741 | Eukarya | RF02543 + RF00002 | Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain | Electron microscopy | 2.44 | 2023-03-15 |
| 41 | 5NDW|1|1+ 5NDW|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome | X-ray diffraction | 3.7 | 2017-12-13 |
| 42 | 5NDW|1|5+ 5NDW|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome | X-ray diffraction | 3.7 | 2017-12-13 |
| 43 | 5NDG|1|5+ 5NDG|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of geneticin (G418) bound to the yeast 80S ribosome | X-ray diffraction | 3.7 | 2017-12-13 |
| 44 | 5NDG|1|1+ 5NDG|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of geneticin (G418) bound to the yeast 80S ribosome | X-ray diffraction | 3.7 | 2017-12-13 |
| 45 | 5TGM|1|1+ 5TGM|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA, Peptidyl-tRNA analog ACCA-Leu-Phe | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.5 | 2017-01-18 |
| 46 | 5TGM|1|5+ 5TGM|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA, Peptidyl-tRNA analog ACCA-Leu-Phe | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.5 | 2017-01-18 |
| 47 | 4V7R|1|B1+ 4V7R|1|B3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast 80S ribosome. | X-ray diffraction | 4 | 2014-07-09 |
| 48 | 4V7R|1|D1+ 4V7R|1|D3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast 80S ribosome. | X-ray diffraction | 4 | 2014-07-09 |
| 49 | 5DAT|1|5+ 5DAT|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-ray diffraction | 3.15 | 2016-08-31 |
| 50 | 5DGV|1|5+ 5DGV|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(8AN)*(Pro)*(Pro))-3') | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.1 | 2016-12-14 |
| 51 | 5DAT|1|1+ 5DAT|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Complex of yeast 80S ribosome with hypusine-containing eIF5A | X-ray diffraction | 3.15 | 2016-08-31 |
| 52 | 5DGV|1|1+ 5DGV|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(8AN)*(Pro)*(Pro))-3') | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.1 | 2016-12-14 |
| 53 | 5DGE|1|5+ 5DGE|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(NA))-3') | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-ray diffraction | 3.45 | 2017-01-25 |
| 54 | 5TGA|1|5+ 5TGA|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.3 | 2016-11-23 |
| 55 | 5DGF|1|5+ 5DGF|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.3 | 2016-12-14 |
| 56 | 5TGA|1|1+ 5TGA|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro | X-ray diffraction | 3.3 | 2016-11-23 |
| 57 | 5DGF|1|1+ 5DGF|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog | X-ray diffraction | 3.3 | 2016-12-14 |
| 58 | 5DGE|1|1+ 5DGE|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA, DNA (5'-R(*CP*CP*(NA))-3') | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome | X-ray diffraction | 3.45 | 2017-01-25 |
| 59 | 5DC3|1|5+ 5DC3|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Complex of yeast 80S ribosome with non-modified eIF5A | X-ray diffraction | 3.25 | 2016-06-01 |
| 60 | 5DC3|1|1+ 5DC3|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Complex of yeast 80S ribosome with non-modified eIF5A | X-ray diffraction | 3.25 | 2016-06-01 |
| 61 | 8EUB|1|A1+ 8EUB|1|A4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I | Electron microscopy | 2.52 | 2023-09-06 |
| 62 | 8HFR|1|1e+ 8HFR|1|3n | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | NPC-trapped pre-60S particle | Electron microscopy | 2.64 | 2023-04-12 |
| 63 | 8AGZ|1|f+ 8AGZ|1|i | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position | Electron microscopy | 2.6 | 2023-03-08 |
| 64 | 8AGT|1|f+ 8AGT|1|i | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast RQC complex in state F | Electron microscopy | 2.6 | 2023-03-08 |
| 65 | 8AGV|1|f+ 8AGV|1|i | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast RQC complex in state H | Electron microscopy | 2.6 | 2023-03-08 |
| 66 | 8AGW|1|f+ 8AGW|1|i | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast RQC complex in state D | Electron microscopy | 2.6 | 2023-03-08 |
| 67 | 8CG8|1|AA+ 8CG8|1|CC | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin | Electron microscopy | 2.57 | 2023-09-20 |
| 68 | 8EVS|1|A1+ 8EVS|1|A4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8 S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure II | Electron microscopy | 2.62 | 2023-09-06 |
| 69 | 8AGU|1|f+ 8AGU|1|i | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast RQC complex in state E | Electron microscopy | 2.7 | 2023-03-08 |
| 70 | 6T4Q|1|C1+ 6T4Q|1|C3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination. | Electron microscopy | 2.6 | 2019-12-25 |
| 71 | 7TOO|1|A25S+ 7TOO|1|A58S | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20 | Electron microscopy | 2.7 | 2022-05-25 |
| 72 | 8CF5|1|AA+ 8CF5|1|CC | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin | Electron microscopy | 2.71 | 2023-09-20 |
| 73 | 8EVQ|1|A1+ 8EVQ|1|A4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8 S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Hypopseudouridylated Ribosome bound with TSV IRES, eEF2, GDP, and sordarin, Structure I | Electron microscopy | 2.72 | 2023-09-06 |
| 74 | 8CDL|1|AA+ 8CDL|1|CC | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex | Electron microscopy | 2.72 | 2023-09-20 |
| 75 | 7MPJ|1|A1+ 7MPJ|1|A4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Stm1 bound vacant 80S structure isolated from nop1-D243A | Electron microscopy | 2.7 | 2022-05-11 |
| 76 | 6WOO|1|5+ 6WOO|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP | Electron microscopy | 2.9 | 2020-09-23 |
| 77 | 6TB3|1|BQ+ 6TB3|1|BS | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex | Electron microscopy | 2.8 | 2020-04-22 |
| 78 | 8P8M|1|A+ 8P8M|1|LD | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast 60S ribosomal subunit, RPL39 deletion | Electron microscopy | 2.66 | 2024-06-12 |
| 79 | 6SNT|1|1+ 6SNT|1|3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast 80S ribosome stalled on SDD1 mRNA. | Electron microscopy | 2.8 | 2020-03-04 |
| 80 | 8EVR|1|A1+ 8EVR|1|A4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8 S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure II | Electron microscopy | 2.87 | 2023-09-06 |
| 81 | 8EWB|1|A1+ 8EWB|1|A4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8 S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure III | Electron microscopy | 2.87 | 2023-09-06 |
| 82 | 7AZY|1|E+ 7AZY|1|G | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Context-specific inhibition of eukaryotic translation by macrolide antibiotics | Electron microscopy | 2.877 | 2021-05-19 |
| 83 | 4U4R|1|1+ 4U4R|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-ray diffraction | 2.8 | 2014-10-22 |
| 84 | 4U4R|1|5+ 4U4R|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-ray diffraction | 2.8 | 2014-10-22 |
| 85 | 8BIP|1|1+ 8BIP|1|C3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex | Electron microscopy | 3.1 | 2023-02-08 |
| 86 | 7UG6|1|1+ 7UG6|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922 | Electron microscopy | 2.9 | 2022-12-21 |
| 87 | 4U3U|1|5+ 4U3U|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-ray diffraction | 2.9 | 2014-10-22 |
| 88 | 4U3U|1|1+ 4U3U|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-ray diffraction | 2.9 | 2014-10-22 |
| 89 | 7N8B|1|A1+ 7N8B|1|A4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S, 5.8S | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cycloheximide bound vacant 80S structure isolated from cbf5-D95A | Electron microscopy | 3.05 | 2022-05-11 |
| 90 | 7MPI|1|A1+ 7MPI|1|A4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8 S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Stm1 bound vacant 80S structure isolated from cbf5-D95A | Electron microscopy | 3.05 | 2022-05-11 |
| 91 | 7ZS5|1|1+ 7ZS5|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA | Electron microscopy | 3.2 | 2023-02-22 |
| 92 | 5T62|1|A+ 5T62|1|C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S Ribosomal RNA, 5.8S Ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex | Electron microscopy | 3.1 | 2017-02-08 |
| 93 | 4U3M|1|1+ 4U3M|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25s rRNA, 5.8s rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 94 | 6YLG|1|1+ 6YLG|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement) | Electron microscopy | 3 | 2020-07-29 |
| 95 | 4U4Q|1|5+ 4U4Q|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 96 | 8CKU|1|AA+ 8CKU|1|CC | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin | Electron microscopy | 3.11 | 2023-09-20 |
| 97 | 4U3M|1|5+ 4U3M|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25s rRNA, 5.8s rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 98 | 4U4U|1|1+ 4U4U|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 99 | 4U4Q|1|1+ 4U4Q|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 100 | 4U4U|1|5+ 4U4U|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 101 | 4U52|1|5+ 4U52|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 102 | 4U52|1|1+ 4U52|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 103 | 7RR5|1|C1+ 7RR5|1|C3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of ribosomal complex bound with Rbg1/Tma46 | Electron microscopy | 3.23 | 2021-11-10 |
| 104 | 7U0H|1|1+ 7U0H|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae BY4741 | Eukarya | RF02543 + RF00002 | State NE1 nucleolar 60S ribosome biogenesis intermediate - Overall model | Electron microscopy | 2.76 | 2022-12-14 |
| 105 | 6Q8Y|1|BQ+ 6Q8Y|1|BS | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex | Electron microscopy | 3.1 | 2019-03-13 |
| 106 | 7OHQ|1|1+ 7OHQ|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae | Electron microscopy | 3.1 | 2021-11-03 |
| 107 | 6YLH|1|1+ 6YLH|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Rix1-Rea1 pre-60S particle - full composite structure | Electron microscopy | 3.1 | 2020-07-29 |
| 108 | 4U6F|1|1+ 4U6F|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2014-10-22 |
| 109 | 6T7T|1|C1+ 6T7T|1|C3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of yeast 80S ribosome stalled on poly(A) tract. | Electron microscopy | 3.1 | 2019-12-25 |
| 110 | 4U6F|1|5+ 4U6F|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of T-2 toxin bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2014-10-22 |
| 111 | 6QIK|1|A+ 6QIK|1|y | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | Electron microscopy | 3.1 | 2019-06-26 |
| 112 | 7B7D|1|LA+ 7B7D|1|LC | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs | Electron microscopy | 3.3 | 2021-03-10 |
| 113 | 6XIR|1|1+ 6XIR|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 35S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress | Electron microscopy | 3.2 | 2020-08-26 |
| 114 | 5M1J|1|14+ 5M1J|1|44 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Nonstop ribosomal complex bound with Dom34 and Hbs1 | Electron microscopy | 3.3 | 2017-01-18 |
| 115 | 4U4N|1|5+ 4U4N|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2014-10-22 |
| 116 | 6TNU|1|BQ+ 6TNU|1|BS | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs. | Electron microscopy | 3.1 | 2020-04-22 |
| 117 | 4U4Z|1|5+ 4U4Z|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2014-10-22 |
| 118 | 4U4N|1|1+ 4U4N|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Edeine bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2014-10-22 |
| 119 | 4U4Z|1|1+ 4U4Z|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Phyllanthoside bound to the yeast 80S ribosome | X-ray diffraction | 3.1 | 2014-10-22 |
| 120 | 6RZZ|1|A+ 6RZZ|1|y | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | Electron microscopy | 3.2 | 2019-06-26 |
| 121 | 8V87|1|1+ 8V87|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae BY4741 | Eukarya | RF02543 + RF00002 | 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map) | Electron microscopy | 2.66 | 2024-05-01 |
| 122 | 6T7I|1|C1+ 6T7I|1|C3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination. | Electron microscopy | 3.2 | 2019-12-25 |
| 123 | 7BT6|1|1+ 7BT6|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RDN25-1 rRNA, RDN5.8-1 rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1) | Electron microscopy | 3.12 | 2020-10-28 |
| 124 | 7BTB|1|1+ 7BTB|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RDN25-1 rRNA, RDN5.8-1 rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2) | Electron microscopy | 3.22 | 2020-10-28 |
| 125 | 4U3N|1|5+ 4U3N|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 126 | 4U4Y|1|5+ 4U4Y|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 127 | 3JCT|1|1+ 3JCT|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RDN25-1 rRNA, RDN58-1 rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-em structure of eukaryotic pre-60S ribosomal subunits | Electron microscopy | 3.08 | 2016-06-01 |
| 128 | 4U3N|1|1+ 4U3N|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 129 | 4U55|1|5+ 4U55|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 130 | 4U4Y|1|1+ 4U4Y|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Pactamycin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 131 | 6S47|1|AA+ 6S47|1|AC | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1 | Electron microscopy | 3.28 | 2019-07-24 |
| 132 | 4U51|1|5+ 4U51|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 133 | 4U51|1|1+ 4U51|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Narciclasine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 134 | 4U55|1|1+ 4U55|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Cryptopleurine bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 135 | 4U50|1|5+ 4U50|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 136 | 6R87|1|1+ 6R87|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1) | Electron microscopy | 3.4 | 2019-06-26 |
| 137 | 5H4P|1|1+ 5H4P|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1 | Electron microscopy | 3.07 | 2017-01-25 |
| 138 | 6M62|1|1+ 6M62|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | RDN25-1 rRNA, RDN58-1 rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 255-344 strain, C4 state. | Electron microscopy | 3.2 | 2020-08-26 |
| 139 | 4U50|1|1+ 4U50|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Verrucarin bound to the yeast 80S ribosome | X-ray diffraction | 3.2 | 2014-10-22 |
| 140 | 6Z6K|1|C1+ 6Z6K|1|C3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of yeast reconstituted Lso2 bound to 80S ribosomes | Electron microscopy | 3.4 | 2020-07-29 |
| 141 | 6Z6J|1|C1+ 6Z6J|1|C3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of yeast Lso2 bound to 80S ribosomes under native condition | Electron microscopy | 3.4 | 2020-07-29 |
| 142 | 6R86|1|1+ 6R86|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast Vms1-60S ribosomal subunit complex (post-state) | Electron microscopy | 3.4 | 2019-07-31 |
| 143 | 6RI5|1|A+ 6RI5|1|y | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S RNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | Electron microscopy | 3.3 | 2019-06-26 |
| 144 | 7ZPQ|1|5+ 7ZPQ|1|3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1) | Electron microscopy | 3.47 | 2023-02-22 |
| 145 | 7OF1|1|1+ 7OF1|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Nog1-TAP associated immature ribosomal particle population A from S. cerevisiae | Electron microscopy | 3.1 | 2021-11-03 |
| 146 | 5JUP|1|B+ 5JUP|1|C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit) | Electron microscopy | 3.5 | 2016-10-05 |
| 147 | 6HD7|1|1+ 6HD7|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of the ribosome-NatA complex | Electron microscopy | 3.4 | 2018-12-19 |
| 148 | 6QT0|1|A+ 6QT0|1|y | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | Electron microscopy | 3.4 | 2019-06-26 |
| 149 | 4U53|1|1+ 4U53|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 2014-10-22 |
| 150 | 6N8M|1|A+ 6N8M|1|C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA, 5.8S RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit | Electron microscopy | 3.5 | 2019-03-13 |
| 151 | 6N8O|1|A+ 6N8O|1|C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit | Electron microscopy | 3.5 | 2019-03-13 |
| 152 | 7NAC|1|1+ 7NAC|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae BY4741 | Eukarya | RF02543 + RF00002 | State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite model | Electron microscopy | 3.04 | 2022-11-09 |
| 153 | 8Y0U|1|C1 | Large subunit ribosomal RNA | 25S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 | dormant ribosome with STM1 | Electron microscopy | 3.59 | 2024-02-07 |
| 154 | 4U53|1|5+ 4U53|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome | X-ray diffraction | 3.3 | 2014-10-22 |
| 155 | 7OH3|1|1+ 7OH3|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Nog1-TAP associated immature ribosomal particle population B from S. cerevisiae | Electron microscopy | 3.4 | 2021-11-03 |
| 156 | 6SV4|1|YQ+ 6SV4|1|YS | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | The cryo-EM structure of SDD1-stalled collided trisome. | Electron microscopy | 3.3 | 2020-03-04 |
| 157 | 6SV4|1|BQ+ 6SV4|1|BS | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | The cryo-EM structure of SDD1-stalled collided trisome. | Electron microscopy | 3.3 | 2020-03-04 |
| 158 | 6SV4|1|ZQ+ 6SV4|1|ZS | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | The cryo-EM structure of SDD1-stalled collided trisome. | Electron microscopy | 3.3 | 2020-03-04 |
| 159 | 6R84|1|1+ 6R84|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1) | Electron microscopy | 3.6 | 2019-06-26 |
| 160 | 7R7A|1|1+ 7R7A|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae BY4741 | Eukarya | RF02543 + RF00002 | State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model | Electron microscopy | 3.04 | 2022-11-09 |
| 161 | 7Z34|1|1+ 7Z34|1|3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 35S pre-ribosomal RNA, 5.8S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Structure of pre-60S particle bound to DRG1(AFG2) | Electron microscopy | 3.8 | 2022-09-21 |
| 162 | 6N8L|1|1+ 6N8L|1|3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit | Electron microscopy | 3.6 | 2019-03-13 |
| 163 | 8V83|1|1+ 8V83|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | Saccharomyces cerevisiae S288C 25S ribosomal RNA, Saccharomyces cerevisiae S288C 5.8S ribosomal RNA | Saccharomyces cerevisiae BY4741 | Eukarya | RF02543 + RF00002 | 60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map) | Electron microscopy | 2.53 | 2024-05-01 |
| 164 | 6N8K|1|1+ 6N8K|1|3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit | Electron microscopy | 3.6 | 2019-03-13 |
| 165 | 5APO|1|5+ 5APO|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1 | Electron microscopy | 3.41 | 2015-12-16 |
| 166 | 8BJQ|1|1+ 8BJQ|1|C3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex | Electron microscopy | 3.8 | 2023-02-08 |
| 167 | 8BQX|1|BQ+ 8BQX|1|BS | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast 80S ribosome in complex with Map1 (conformation 2) | Electron microscopy | 3.8 | 2023-03-22 |
| 168 | 6QTZ|1|A+ 6QTZ|1|y | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | Electron microscopy | 3.5 | 2019-06-26 |
| 169 | 6N8J|1|1+ 6N8J|1|3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of late nuclear (LN) pre-60S ribosomal subunit | Electron microscopy | 3.5 | 2019-03-13 |
| 170 | 6OIG|1|5+ 6OIG|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Subunit joining exposes nascent pre-40S rRNA for processing and quality control | Electron microscopy | 3.8 | 2020-09-30 |
| 171 | 4U56|1|1+ 4U56|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-ray diffraction | 3.45 | 2014-10-22 |
| 172 | 4U56|1|5+ 4U56|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Blasticidin S bound to the yeast 80S ribosome | X-ray diffraction | 3.45 | 2014-10-22 |
| 173 | 8BQD|1|BQ+ 8BQD|1|BS | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast 80S ribosome in complex with Map1 (conformation 1) | Electron microscopy | 3.9 | 2023-03-22 |
| 174 | 8CMJ|1|AA+ 8CMJ|1|CC | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin | Electron microscopy | 3.79 | 2023-09-20 |
| 175 | 8V84|1|1+ 8V84|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | Saccharomyces cerevisiae 25S ribosomal RNA, Saccharomyces cerevisiae 5.8S ribosomal RNA | Saccharomyces cerevisiae BY4741 | Eukarya | RF02543 + RF00002 | 60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map) | Electron microscopy | 2.7 | 2024-05-01 |
| 176 | 6N8N|1|A+ 6N8N|1|C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit | Electron microscopy | 3.8 | 2019-03-13 |
| 177 | 7NRC|1|LA+ 7NRC|1|LC | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA (3184-MER), 5.8S rRNA (158-MER) | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A | Electron microscopy | 3.9 | 2021-05-05 |
| 178 | 5MC6|1|BQ+ 5MC6|1|BS | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae | Electron microscopy | 3.8 | 2017-01-18 |
| 179 | 6GQB|1|1+ 6GQB|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin) | Electron microscopy | 3.9 | 2018-07-11 |
| 180 | 5JUU|1|B+ 5JUU|1|C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit) | Electron microscopy | 4 | 2016-10-05 |
| 181 | 6T83|1|1b+ 6T83|1|3b | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of yeast disome (di-ribosome) stalled on poly(A) tract. | Electron microscopy | 4 | 2019-12-25 |
| 182 | 5JUT|1|B+ 5JUT|1|C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit) | Electron microscopy | 4 | 2016-10-05 |
| 183 | 5JUO|1|B+ 5JUO|1|C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit) | Electron microscopy | 4 | 2016-10-05 |
| 184 | 6T83|1|Aa+ 6T83|1|Ca | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of yeast disome (di-ribosome) stalled on poly(A) tract. | Electron microscopy | 4 | 2019-12-25 |
| 185 | 6S05|1|A+ 6S05|1|y | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles | Electron microscopy | 3.9 | 2019-06-26 |
| 186 | 6GQV|1|1+ 6GQV|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP) | Electron microscopy | 4 | 2018-07-11 |
| 187 | 6FT6|1|1+ 6FT6|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 7S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors | Electron microscopy | 3.9 | 2018-03-28 |
| 188 | 5JUS|1|B+ 5JUS|1|C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit) | Electron microscopy | 4.2 | 2016-10-05 |
| 189 | 6ELZ|1|1+ 6ELZ|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmes | Electron microscopy | 3.3 | 2017-12-27 |
| 190 | 6XIQ|1|1+ 6XIQ|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 35S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress | Electron microscopy | 4.2 | 2020-08-26 |
| 191 | 5APN|1|5+ 5APN|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1 | Electron microscopy | 3.91 | 2015-12-16 |
| 192 | 5T6R|1|A+ 5T6R|1|C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S Ribosomal RNA, 5.8S Ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex | Electron microscopy | 4.2 | 2017-02-08 |
| 193 | 6YLY|1|1+ 6YLY|1|3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | pre-60S State NE2 (TAP-Flag-Nop53) | Electron microscopy | 3.8 | 2020-07-29 |
| 194 | 7ZUW|1|5+ 7ZUW|1|3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae | Electron microscopy | 4.3 | 2023-02-22 |
| 195 | 4U4O|1|5+ 4U4O|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Geneticin bound to the yeast 80S ribosome | X-ray diffraction | 3.6 | 2014-10-22 |
| 196 | 4U4O|1|1+ 4U4O|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Crystal structure of Geneticin bound to the yeast 80S ribosome | X-ray diffraction | 3.6 | 2014-10-22 |
| 197 | 7NRD|1|LA+ 7NRD|1|LC | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA (3184-MER), 5.8S rRNA (158-MER) | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA | Electron microscopy | 4.36 | 2021-04-14 |
| 198 | 4V8Y|1|B5+ 4V8Y|1|B8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex | Electron microscopy | 4.3 | 2014-07-09 |
| 199 | 6GQ1|1|1+ 6GQ1|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA, 5S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin) | Electron microscopy | 4.4 | 2018-07-11 |
| 200 | 6YLX|1|1+ 6YLX|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | pre-60S State NE1 (TAP-Flag-Nop53) | Electron microscopy | 3.9 | 2020-07-29 |
| 201 | 5GAK|1|1+ 5GAK|1|4 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A | Electron microscopy | 3.88 | 2016-02-24 |
| 202 | 7ZRS|1|5+ 7ZRS|1|3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map | Electron microscopy | 4.8 | 2023-02-22 |
| 203 | 7OHX|1|1+ 7OHX|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population A | Electron microscopy | 3.3 | 2021-11-03 |
| 204 | 7OHV|1|1+ 7OHV|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population C | Electron microscopy | 3.9 | 2021-11-03 |
| 205 | 6EM1|1|1+ 6EM1|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes | Electron microscopy | 3.6 | 2017-12-27 |
| 206 | 6EM5|1|1 | Large subunit ribosomal RNA | 25S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 | State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes | Electron microscopy | 4.3 | 2017-12-27 |
| 207 | 6EM3|1|1 | Large subunit ribosomal RNA | 25S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 | State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes | Electron microscopy | 3.2 | 2017-12-27 |
| 208 | 7OHU|1|1+ 7OHU|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population B | Electron microscopy | 3.7 | 2021-11-03 |
| 209 | 7OHY|1|1+ 7OHY|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population B | Electron microscopy | 3.9 | 2021-11-03 |
| 210 | 7OHW|1|1+ 7OHW|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population B | Electron microscopy | 3.5 | 2021-11-03 |
| 211 | 7OHP|1|1+ 7OHP|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population A | Electron microscopy | 3.9 | 2021-11-03 |
| 212 | 7OHR|1|1+ 7OHR|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Nog1-TAP associated immature ribosomal particle population E from S. cerevisiae | Electron microscopy | 4.72 | 2021-11-10 |
| 213 | 6I7O|1|BQ | Large subunit ribosomal RNA | 25S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 | The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition. | Electron microscopy | 5.3 | 2019-01-16 |
| 214 | 6I7O|1|YQ | Large subunit ribosomal RNA | 25S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 | The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition. | Electron microscopy | 5.3 | 2019-01-16 |
| 215 | 6C0F|1|1+ 6C0F|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | Saccharomyces cerevisiae S288c 35S pre-ribosomal RNA miscRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast nucleolar pre-60S ribosomal subunit (state 2) | Electron microscopy | 3.7 | 2018-03-14 |
| 216 | 6EM4|1|1 | Large subunit ribosomal RNA | 25S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 | State B architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes | Electron microscopy | 4.1 | 2017-12-27 |
| 217 | 7OHS|1|1+ 7OHS|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 + RF00002 | Nog1-TAP associated immature ribosomal particle population F from S. cerevisiae | Electron microscopy | 4.38 | 2021-11-03 |
| 218 | 3J6Y|1|2S+ 3J6Y|1|8S | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I) | Electron microscopy | 6.1 | 2014-06-11 |
| 219 | 3J6X|1|2S+ 3J6X|1|8S | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II) | Electron microscopy | 6.1 | 2014-06-11 |
| 220 | 3J77|1|2S+ 3J77|1|8S | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA) | Electron microscopy | 6.2 | 2014-08-06 |
| 221 | 3J78|1|2S+ 3J78|1|8S | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs) | Electron microscopy | 6.3 | 2014-08-06 |
| 222 | 7OHT|1|1 | Large subunit ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae S288C | Eukarya | RF02543 | Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population A | Electron microscopy | 4.7 | 2021-11-03 |
| 223 | 8E5T|1|1+ 8E5T|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S ribosomal RNA, 5.8S ribosomal RNA | Saccharomyces cerevisiae BY4741 | Eukarya | RF02543 + RF00002 | Yeast co-transcriptional Noc1-Noc2 RNP assembly checkpoint intermediate | Electron microscopy | 4 | 2023-04-12 |
| 224 | 6CB1|1|1+ 6CB1|1|2 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 35S pre-ribosomal RNA miscRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Yeast nucleolar pre-60S ribosomal subunit (state 3) | Electron microscopy | 4.6 | 2018-03-14 |
| 225 | 5Z3G|1|A+ 5Z3G|1|B | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP) | Electron microscopy | 3.65 | 2018-04-11 |
| 226 | 4V8Z|1|B5+ 4V8Z|1|B8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex | Electron microscopy | 6.6 | 2014-07-09 |
| 227 | 4V8T|1|5+ 4V8T|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1 | Electron microscopy | 8.1 | 2014-07-09 |
| 228 | 4V7F|1|1 | Large subunit ribosomal RNA | 25S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 | Arx1 pre-60S particle. | Electron microscopy | 8.7 | 2014-07-09 |
| 229 | 4V6I|1|DA+ 4V6I|1|DB | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 25S rRNA, 5.8S rRNA | Saccharomyces cerevisiae | Eukarya | RF02543 + RF00002 | Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome | Electron microscopy | 8.8 | 2014-07-09 |
| 230 | 5JCS|1|x | Large subunit ribosomal RNA | 25S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF02543 | CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLE | Electron microscopy | 9.5 | 2016-11-16 |