BGSU RNA Site //

Equivalence class NR_20.0_90633.9 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
15HL7|1|X (rep)Large subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulinX-ray diffraction3.552016-12-21
24WCE|1|XLarge subunit ribosomal RNA23S rRNAStaphylococcus aureusBacteriaRF02541The crystal structure of the large ribosomal subunit of Staphylococcus aureusX-ray diffraction3.532015-10-21
34WF9|1|XLarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycinX-ray diffraction3.432015-10-21
45NGM|1|AALarge subunit ribosomal RNA23S Ribosomal RNAStaphylococcus aureusBacteriaRF025412.9S structure of the 70S ribosome composing the S. aureus 100S complexElectron microscopy2.92017-10-04
55NG8|1|AA23S ribosomal RNAThe cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusElectron microscopy6.762017-10-04
65NG8|1|BA23S ribosomal RNAThe cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusElectron microscopy6.762017-10-04
74WFB|1|XLarge subunit ribosomal RNA23S rRNAStaphylococcus aureusBacteriaRF02541The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205X-ray diffraction3.432015-10-21
84WFA|1|XLarge subunit ribosomal RNA23S rRNAStaphylococcus aureusBacteriaRF02541The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolidX-ray diffraction3.392015-10-21
95NRG|1|XLarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02X-ray diffraction3.442017-08-09
105HKV|1|XLarge subunit ribosomal RNA23s ribosomal RNAStaphylococcus aureusBacteriaRF02541The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycinX-ray diffraction3.662017-05-03
115ND8|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541Hibernating ribosome from Staphylococcus aureus (Unrotated state)Electron microscopy3.72017-06-28
125LI0|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF0254170S ribosome from Staphylococcus aureusElectron microscopy3.82016-12-28
135ND9|1|ALarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541Hibernating ribosome from Staphylococcus aureus (Rotated state)Electron microscopy3.72017-06-28
145T7V|1|BLarge subunit ribosomal RNA23S ribosomal RNAStaphylococcus aureusBacteriaRF02541Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)Electron microscopy3.62017-05-31
155TCU|1|BLarge subunit ribosomal RNA23S RRNAStaphylococcus aureusBacteriaRF02541Methicillin sensitive Staphylococcus aureus 70S ribosomeElectron microscopy3.92017-05-24

Release history

Release2.1492.1502.1512.1522.1532.1542.1552.1562.1572.1583.03.13.23.33.43.53.63.73.83.93.103.113.123.13
Date2017-10-072017-10-142017-10-212017-10-282017-11-032017-11-102017-11-172017-11-242017-12-012017-12-082017-12-152017-12-222017-12-292018-01-052018-01-122018-01-192018-01-262018-02-022018-02-092018-02-162018-02-232018-03-012018-03-082018-03-15

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_90633.9NR_20.0_90633.82.149(12) 5T7V|1|B, 5NRG|1|X, 5ND9|1|A, 5ND8|1|A, 5LI0|1|A, 5HL7|1|X, 5HKV|1|X, 4WFB|1|X, 4WFA|1|X, 4WF9|1|X, 5TCU|1|B, 4WCE|1|X(3) 5NG8|1|AA, 5NGM|1|AA, 5NG8|1|BA(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_90633.9NR_20.0_90633.103.14(15) 5HL7|1|X, 5T7V|1|B, 5HKV|1|X, 5NRG|1|X, 4WFB|1|X, 5NGM|1|AA, 4WFA|1|X, 5NG8|1|BA, 4WF9|1|X, 5NG8|1|AA, 4WCE|1|X, 5ND9|1|A, 5ND8|1|A, 5LI0|1|A, 5TCU|1|B(0) (2) 6FXC|1|AA, 6FXC|1|BA

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15NG8|1|AAThe cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusELECTRON MICROSCOPY6.762905
25NGM|1|AA2.9S structure of the 70S ribosome composing the S. aureus 100S complexELECTRON MICROSCOPY2.92905
35NG8|1|BAThe cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureusELECTRON MICROSCOPY6.762905
45NRG|1|XThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02X-RAY DIFFRACTION3.442711
55HKV|1|XThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycinX-RAY DIFFRACTION3.662695
65HL7|1|XThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulinX-RAY DIFFRACTION3.552705
74WCE|1|XThe crystal structure of the large ribosomal subunit of Staphylococcus aureusX-RAY DIFFRACTION3.532708
84WFA|1|XThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolidX-RAY DIFFRACTION3.392711
94WFB|1|XThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205X-RAY DIFFRACTION3.432707
104WF9|1|XThe crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycinX-RAY DIFFRACTION3.432712
115LI0|1|A70S ribosome from Staphylococcus aureusELECTRON MICROSCOPY3.82914
125ND8|1|AHibernating ribosome from Staphylococcus aureus (Unrotated state)ELECTRON MICROSCOPY3.72912
135ND9|1|AHibernating ribosome from Staphylococcus aureus (Rotated state)ELECTRON MICROSCOPY3.72914
145TCU|1|BMethicillin sensitive Staphylococcus aureus 70S ribosomeELECTRON MICROSCOPY3.92755
155T7V|1|BMethicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)ELECTRON MICROSCOPY3.62768
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