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Equivalence class NR_20.0_90759.3 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16QDV|1|2+ 6QDV|1|6 (rep)U2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2 snRNA, U6 snRNA, Intron lariat: MINX RNAHomo sapiensEukaryaRF00004 + RF00026Human post-catalytic P complex spliceosomeElectron microscopy3.32019-02-20
26ICZ|1|H+ 6ICZ|1|FU2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2snRNA, U6snRNA, pre-mRNAHomo sapiensEukaryaRF00004 + RF00026Cryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstromElectron microscopy32019-03-13
36ID1|1|H+ 6ID1|1|FU2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2snRNA, U6snRNA, pre-mRNAHomo sapiensEukaryaRF00004 + RF00026Cryo-EM structure of a human intron lariat spliceosome after Prp43 loaded (ILS2 complex) at 2.9 angstrom resolutionElectron microscopy2.862019-03-13
45XJC|1|H+ 5XJC|1|FU2 splicesomal small nuclear RNA + U6 spliceosomal RNAHomo sapiens small nuclear RNA (U2) gene, U6 snRNA, pre-mRNAHomo sapiensEukaryaRF00004 + RF00026Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstromElectron microscopy3.62017-07-05
55YZG|1|H+ 5YZG|1|FU2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2 snRNA, U6 snRNA, Pre-mRNAHomo sapiensEukaryaRF00004 + RF00026The Cryo-EM Structure of Human Catalytic Step I Spliceosome (C complex) at 4.1 angstrom resolutionElectron microscopy4.12018-08-08
65Z58|1|H+ 5Z58|1|FU2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2 snRNA, U6 snRNA, pre-mRNAHomo sapiensEukaryaRF00004 + RF00026Cryo-EM structure of a human activated spliceosome (early Bact) at 4.9 angstrom.Electron microscopy4.92018-09-19
75MQF|1|2+ 5MQF|1|6U2 splicesomal small nuclear RNA + U6 spliceosomal RNAHuman gene for small nuclear RNA U2 (snRNA U2), Homo sapiens RNA, U6 small nuclear 1 (RNU6-1), small nuclear RNA, MINX pre-mRNA (intron)Homo sapiensEukaryaRF00004 + RF00026Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex)Electron microscopy5.92017-03-22
85Z56|1|H+ 5Z56|1|FU2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2 snRNA, U6 snRNA, pre-mRNAHomo sapiensEukaryaRF00004 + RF00026cryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom.Electron microscopy5.12018-09-19
95Z57|1|H+ 5Z57|1|FU2 splicesomal small nuclear RNA + U6 spliceosomal RNAU2 snRNA, U6 snRNA, pre-mRNAHomo sapiensEukaryaRF00004 + RF00026Cryo-EM structure of the human activated spliceosome (late Bact) at 6.5 angstromElectron microscopy6.52018-09-19

Release history

Release3.653.663.673.683.69
Date2019-03-152019-03-222019-03-292019-04-052019-04-12

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_90759.3NR_20.0_90759.23.65(7) 6QDV|1|2+6QDV|1|6, 5Z58|1|H+5Z58|1|F, 5Z57|1|H+5Z57|1|F, 5Z56|1|H+5Z56|1|F, 5YZG|1|H+5YZG|1|F, 5XJC|1|H+5XJC|1|F, 5MQF|1|2+5MQF|1|6(2) 6ICZ|1|H+6ICZ|1|F, 6ID1|1|H+6ID1|1|F(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_90759.3NR_20.0_90759.43.70(9) 5MQF|1|2+5MQF|1|6, 6QDV|1|2+6QDV|1|6, 6ID1|1|H+6ID1|1|F, 6ICZ|1|H+6ICZ|1|F, 5Z58|1|H+5Z58|1|F, 5Z57|1|H+5Z57|1|F, 5Z56|1|H+5Z56|1|F, 5YZG|1|H+5YZG|1|F, 5XJC|1|H+5XJC|1|F(0) (1) 6QX9|1|2

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15MQF|1|2+5MQF|1|6Cryo-EM structure of a human spliceosome activated for step 2 of splicing (C* complex)ELECTRON MICROSCOPY5.9140
26QDV|1|2+6QDV|1|6Human post-catalytic P complex spliceosomeELECTRON MICROSCOPY3.3120
36ICZ|1|H+6ICZ|1|FCryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstromELECTRON MICROSCOPY3140
45XJC|1|H+5XJC|1|FCryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstromELECTRON MICROSCOPY3.6140
56ID1|1|H+6ID1|1|FCryo-EM structure of a human intron lariat spliceosome after Prp43 loaded (ILS2 complex) at 2.9 angstrom resolutionELECTRON MICROSCOPY2.86136
65YZG|1|H+5YZG|1|FThe Cryo-EM Structure of Human Catalytic Step I Spliceosome (C complex) at 4.1 angstrom resolutionELECTRON MICROSCOPY4.1139
75Z57|1|H+5Z57|1|FCryo-EM structure of the human activated spliceosome (late Bact) at 6.5 angstromELECTRON MICROSCOPY6.5136
85Z56|1|H+5Z56|1|Fcryo-EM structure of a human activated spliceosome (mature Bact) at 5.1 angstrom.ELECTRON MICROSCOPY5.1136
95Z58|1|H+5Z58|1|FCryo-EM structure of a human activated spliceosome (early Bact) at 4.9 angstrom.ELECTRON MICROSCOPY4.9136
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