#IFECompound(s)RNA source organismTitleMethodResolutionDate
14NLF|1|A (rep)23S ribosomal RNA Sarcin Ricin Loop2'-trifluoromethylthio-2'-deoxycytidine-modified SRLX-RAY DIFFRACTION12014-11-19
25D99|1|ARNA (27-MER) hairpin from sarcin-ricin domain of E. coli 23S rRNAEnterobacteria phage L13DW4 redetermined by direct methods starting from random phase anglesX-RAY DIFFRACTION0.972016-04-13
36Y0Y|1|ARNA (27-MER)Sarcin Ricin Loop, mutant C2666UX-RAY DIFFRACTION0.952021-02-17
41Q9A|1|ASarcin/ricin 23S rRNACrystal structure of the sarcin/ricin domain from E.coli 23S rRNA at 1.04 resolutionX-RAY DIFFRACTION1.042003-11-25
54NMG|1|A23S ribosomal RNA Sarcin Ricin Loop2'-Trifluoromethylthio-2'-deoxyuridine-modified SRLX-RAY DIFFRACTION1.012014-11-19
66ZYB|1|ASarcin-Ricin Loop RNA from Ecoli with a C2667-2'-OCF3 modificationSarcin-Ricin Loop RNA from Ecoli with a C2667-2'-OCF3 modificationX-RAY DIFFRACTION0.92020-12-16
73DW4|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-OCH3 modifiedX-RAY DIFFRACTION0.972009-03-24
83DW6|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-SECH3 modifiedX-RAY DIFFRACTION12009-03-24
94Y27|1|A27-mer 23S Sarcin-Ricil LoopEscherichia coliE.coli 23S Sarcin-Ricil Loop, modified with a 2-Me on G2661 and a methylphosphonate on A2662X-RAY DIFFRACTION12015-11-18
107JJE|1|ARNA (27-MER)Sarcin-ricin loop with guanosine dithiophosphate residue.X-RAY DIFFRACTION1.252020-12-23
113DVZ|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. coli 23 S rRNAX-RAY DIFFRACTION12009-03-24
124NXH|1|A23S ribosomal RNA Sarcin Ricin LoopEscherichia coli2'-Trifluoromethylthiouridine-modified E. coli 23S rRNA Sarcin Ricin LoopX-RAY DIFFRACTION1.162014-12-10
135NQI|1|AE.Coli 27-mer SRL RNAEscherichia coliE.coli 16S rRNA Sarcin-Ricin Loop containing a 5-hydroxymethylcytosine modificationX-RAY DIFFRACTION0.852017-07-26
143S7C|1|AEcoli 23 S rRNA Sarcin Ricin loopCrystal structure of a 2'-azido-uridine-modified RNAX-RAY DIFFRACTION1.12012-04-11
155MRX|1|ARNA (27-MER)Escherichia coli27-nt SRL with a 5-hydroxymethyl cytidine modificationX-RAY DIFFRACTION0.852018-01-17
163DW5|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23S rRNA, U2656-OCH3 modifiedX-RAY DIFFRACTION0.962009-03-24
173DW7|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2656-SeCH3 modifiedX-RAY DIFFRACTION12009-03-24
18483D|1|ASARCIN/RICIN RRNA DOMAINCRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-RAY DIFFRACTION1.111999-10-08
193S8U|1|AEcoli 23 S rRNA Sarcin Ricin loopEscherichia coliCrystal structure of a 2-azido-adenine-modified RNAX-RAY DIFFRACTION1.22012-04-11
207JJD|1|ARNA (27-MER)Sarcin-ricin loop with guanosine monothiophosphate residue.X-RAY DIFFRACTION1.212020-12-23
211MSY|1|ASARCIN/RICIN DOMAIN FROM 23 S RRNAGUAA tetraloop mutant of Sarcin/Ricin domain from E. Coli 23 S rRNAX-RAY DIFFRACTION1.412003-02-25
22480D|1|ASARCIN/RICIN DOMAIN FROM 23 S RRNACRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-RAY DIFFRACTION1.51999-10-08
236Y0T|1|BRNA (27-MER)Sarcin Ricin Loop, mutant C2666A U2653G C2667AX-RAY DIFFRACTION1.3932021-02-17
246Y0T|1|ARNA (27-MER)Sarcin Ricin Loop, mutant C2666A U2653G C2667AX-RAY DIFFRACTION1.3932021-02-17
257JJF|1|ARNA/DNA (27-mer)Sarcin-ricin loop with modified residue.X-RAY DIFFRACTION1.22020-12-23
261JBR|1|D31-mer SRD RNA analogCrystal Structure of the Ribotoxin Restrictocin and a 31-mer SRD RNA InhibitorX-RAY DIFFRACTION2.152001-10-26
271JBT|1|C29-MER SARCIN/RICIN DOMAIN RNA ANALOGCRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN COMPLEXED WITH A 29-MER SARCIN/RICIN DOMAIN RNA ANALOGX-RAY DIFFRACTION2.72001-10-26
286ZXZ|1|BSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationX-RAY DIFFRACTION2.442020-12-16
291JBT|1|D29-MER SARCIN/RICIN DOMAIN RNA ANALOGCRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN COMPLEXED WITH A 29-MER SARCIN/RICIN DOMAIN RNA ANALOGX-RAY DIFFRACTION2.72001-10-26
301JBS|1|D29-mer sarcin/ricin domain RNA analogCrystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analogX-RAY DIFFRACTION1.972001-10-26
316ZXZ|1|ASarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationX-RAY DIFFRACTION2.442020-12-16
326ZXZ|1|CSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationX-RAY DIFFRACTION2.442020-12-16
331JBS|1|C29-mer sarcin/ricin domain RNA analogCrystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analogX-RAY DIFFRACTION1.972001-10-26
343EP2|1|DFragment H95 of the 23S rRNAEscherichia coliModel of Phe-tRNA(Phe) in the ribosomal pre-accommodated state revealed by cryo-EMELECTRON MICROSCOPY92008-12-16
353EQ3|1|DFragment H95 of the 23S rRNAEscherichia coliModel of tRNA(Trp)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EMELECTRON MICROSCOPY92008-12-16
363DEG|1|I50S RNA helix 95Escherichia coliComplex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNPELECTRON MICROSCOPY10.92008-08-19
371EG0|1|MHELIX 95 OF 23S RRNAEscherichia coliFITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOMEELECTRON MICROSCOPY11.52000-03-06
383EQ4|1|DFragment H95 of the 23S rRNAEscherichia coliModel of tRNA(Leu)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EMELECTRON MICROSCOPY122008-12-16

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
11MSY|1|AGUAA tetraloop mutant of Sarcin/Ricin domain from E. Coli 23 S rRNAX-RAY DIFFRACTION1.4131
26Y0Y|1|ASarcin Ricin Loop, mutant C2666UX-RAY DIFFRACTION0.9527
36Y0T|1|ASarcin Ricin Loop, mutant C2666A U2653G C2667AX-RAY DIFFRACTION1.39330
46Y0T|1|BSarcin Ricin Loop, mutant C2666A U2653G C2667AX-RAY DIFFRACTION1.39330
54NLF|1|A2'-trifluoromethylthio-2'-deoxycytidine-modified SRLX-RAY DIFFRACTION128
6480D|1|ACRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-RAY DIFFRACTION1.527
74NMG|1|A2'-Trifluoromethylthio-2'-deoxyuridine-modified SRLX-RAY DIFFRACTION1.0136
83DW7|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2656-SeCH3 modifiedX-RAY DIFFRACTION137
94NXH|1|A2'-Trifluoromethylthiouridine-modified E. coli 23S rRNA Sarcin Ricin LoopX-RAY DIFFRACTION1.1632
107JJF|1|ASarcin-ricin loop with modified residue.X-RAY DIFFRACTION1.227
115MRX|1|A27-nt SRL with a 5-hydroxymethyl cytidine modificationX-RAY DIFFRACTION0.8534
125NQI|1|AE.coli 16S rRNA Sarcin-Ricin Loop containing a 5-hydroxymethylcytosine modificationX-RAY DIFFRACTION0.8534
13483D|1|ACRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-RAY DIFFRACTION1.1139
141Q9A|1|ACrystal structure of the sarcin/ricin domain from E.coli 23S rRNA at 1.04 resolutionX-RAY DIFFRACTION1.0438
153DW5|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23S rRNA, U2656-OCH3 modifiedX-RAY DIFFRACTION0.9632
163S8U|1|ACrystal structure of a 2-azido-adenine-modified RNAX-RAY DIFFRACTION1.234
177JJD|1|ASarcin-ricin loop with guanosine monothiophosphate residue.X-RAY DIFFRACTION1.2129
183DVZ|1|ACrystal Structure of the Sarcin/Ricin Domain from E. coli 23 S rRNAX-RAY DIFFRACTION135
197JJE|1|ASarcin-ricin loop with guanosine dithiophosphate residue.X-RAY DIFFRACTION1.2529
206ZYB|1|ASarcin-Ricin Loop RNA from Ecoli with a C2667-2'-OCF3 modificationX-RAY DIFFRACTION0.930
214Y27|1|AE.coli 23S Sarcin-Ricil Loop, modified with a 2-Me on G2661 and a methylphosphonate on A2662X-RAY DIFFRACTION125
225D99|1|A3DW4 redetermined by direct methods starting from random phase anglesX-RAY DIFFRACTION0.9730
233DW4|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-OCH3 modifiedX-RAY DIFFRACTION0.9726
243DW6|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-SECH3 modifiedX-RAY DIFFRACTION128
253S7C|1|ACrystal structure of a 2'-azido-uridine-modified RNAX-RAY DIFFRACTION1.132
266ZXZ|1|ASarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationX-RAY DIFFRACTION2.4425
276ZXZ|1|CSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationX-RAY DIFFRACTION2.4425
286ZXZ|1|BSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationX-RAY DIFFRACTION2.4425
293DEG|1|IComplex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNPELECTRON MICROSCOPY10.929
301JBS|1|CCrystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analogX-RAY DIFFRACTION1.9717
311JBS|1|DCrystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analogX-RAY DIFFRACTION1.9717
321JBT|1|CCRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN COMPLEXED WITH A 29-MER SARCIN/RICIN DOMAIN RNA ANALOGX-RAY DIFFRACTION2.729
331JBT|1|DCRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN COMPLEXED WITH A 29-MER SARCIN/RICIN DOMAIN RNA ANALOGX-RAY DIFFRACTION2.729
341JBR|1|DCrystal Structure of the Ribotoxin Restrictocin and a 31-mer SRD RNA InhibitorX-RAY DIFFRACTION2.1531
353EQ3|1|DModel of tRNA(Trp)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EMELECTRON MICROSCOPY928
363EP2|1|DModel of Phe-tRNA(Phe) in the ribosomal pre-accommodated state revealed by cryo-EMELECTRON MICROSCOPY928
373EQ4|1|DModel of tRNA(Leu)-EF-Tu in the ribosomal pre-accommodated state revealed by cryo-EMELECTRON MICROSCOPY1228
381EG0|1|MFITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOMEELECTRON MICROSCOPY11.526