Equivalence class NR_20.0_95556.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4V8U|1|CV (rep) | Transfer RNA | MRNA, RNA | Thermus thermophilus | Bacteria | RF00005 | Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex. | X-ray diffraction | 3.7 | 2014-07-09 |
| 2 | 4V8U|1|AV | Transfer RNA | MRNA, RNA | Thermus thermophilus | Bacteria | RF00005 | Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex. | X-ray diffraction | 3.7 | 2014-07-09 |
| 3 | 4V90|1|AV | Transfer RNA | 5'-R(*UP*AP*AP*AP*AP*AP*UP*GP*UP)-3', RNA (77-MER) | Thermus thermophilus | Bacteria | RF00005 | Thermus thermophilus Ribosome | X-ray diffraction | 2.95 | 2014-07-09 |
| 4 | 3BBV|1|z | Transfer RNA | tRNA(Phe) | Thermus thermophilus | Bacteria | RF00005 | The tRNA(phe) fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex | Electron microscopy | 10 | 2008-10-21 |
| 5 | 4V68|1|AW | Transfer RNA | E-SITE TRNA | Thermus thermophilus | Bacteria | RF00005 | T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map. | Electron microscopy | 6.4 | 2014-07-09 |
| 6 | 4WT8|1|D3 | Transfer RNA | A site tNA, E site tNA | Thermus thermophilus | Bacteria | RF00005 | Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex | X-ray diffraction | 3.4 | 2015-01-21 |
| 7 | 3J9Z|1|S7 | Transfer RNA | E-tRNA | Thermus thermophilus | Bacteria | RF00005 | Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G | Electron microscopy | 3.6 | 2015-07-01 |
| 8 | 4V5A|1|AV+ 4V5A|1|AX | MRNA, P-SITE RNA ASL-PHE | synthetic construct | Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet | X-ray diffraction | 3.5 | 2014-07-09 | |||
| 9 | 4V5A|1|CV+ 4V5A|1|CX | MRNA, P-SITE RNA ASL-PHE | synthetic construct | Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet | X-ray diffraction | 3.5 | 2014-07-09 | |||
| 10 | 4WT8|1|C3 | Transfer RNA | A site tNA, E site tNA | Thermus thermophilus | Bacteria | RF00005 | Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex | X-ray diffraction | 3.4 | 2015-01-21 |
| 11 | 4WT8|1|C2 | Transfer RNA | A site tNA, E site tNA, mRNA | Thermus thermophilus | Bacteria | RF00005 | Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex | X-ray diffraction | 3.4 | 2015-01-21 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_95556.3 | NR_all_95556.2 | 2.30 | (10) 3BBV|1|z, 4V5A|1|AV+4V5A|1|AX, 4V5A|1|CV+4V5A|1|CX, 4V68|1|AW, 4V8U|1|AV, 4V8U|1|CV, 4V90|1|AV, 4WT8|1|C2, 4WT8|1|C3, 4WT8|1|D3 | (1) 3J9Z|1|S7 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well.
| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4WT8|1|C2 | Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex | X-RAY DIFFRACTION | 3.4 | 75 |
| 2 | 4WT8|1|C3 | Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex | X-RAY DIFFRACTION | 3.4 | 76 |
| 3 | 4WT8|1|D3 | Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex | X-RAY DIFFRACTION | 3.4 | 76 |
| 4 | 4V68|1|AW | T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map. | ELECTRON MICROSCOPY | 6.4 | 76 |
| 5 | 3J9Z|1|S7 | Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G | ELECTRON MICROSCOPY | 3.6 | 74 |
| 6 | 3BBV|1|z | The tRNA(phe) fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex | ELECTRON MICROSCOPY | 10 | 67 |
| 7 | 4V8U|1|CV | Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex. | X-RAY DIFFRACTION | 3.7 | 76 |
| 8 | 4V8U|1|AV | Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex. | X-RAY DIFFRACTION | 3.7 | 76 |
| 9 | 4V5A|1|CV+4V5A|1|CX | Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet | X-RAY DIFFRACTION | 3.5 | 17 |
| 10 | 4V5A|1|AV+4V5A|1|AX | Structure of the Ribosome Recycling Factor bound to the Thermus thermophilus 70S ribosome with mRNA, ASL-Phe and tRNA-fMet | X-RAY DIFFRACTION | 3.5 | 17 |
| 11 | 4V90|1|AV | Thermus thermophilus Ribosome | X-RAY DIFFRACTION | 2.95 | 76 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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