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Equivalence class NR_20.0_96269.14 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14KZZ|1|j (rep)Transfer RNAinitiator Met-RNA-i, mRNAHomo sapiensEukaryaRF00005Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1AX-ray diffraction7.032013-07-24
26ZP4|1|1Transfer RNAtRNAHomo sapiensEukaryaRF00005SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2Electron microscopy2.92020-07-29
36QZP|1|S6Transfer RNAE site tRNA (75-MER)Homo sapiensEukaryaRF00005High-resolution cryo-EM structure of the human 80S ribosomeElectron microscopy2.92019-04-24
48PPL|1|IwTransfer RNAMet-tRNAi(Met)Homo sapiensEukaryaRF00005MERS-CoV Nsp1 bound to the human 43S pre-initiation complexElectron microscopy2.652023-10-18
57QVP|1|B5Transfer RNAtRNA P/E, mRNAHomo sapiensEukaryaRF00005Human collided disome (di-ribosome) stalled on XBP1 mRNAElectron microscopy32022-10-12
68BTR|1|uTransfer RNAtRNA, mRNAGiardia lamblia ATCC 50803EukaryaRF00005Giardia Ribosome in PRE-T Hybrid State (D2)Electron microscopy3.252023-03-22
78BTR|1|vTransfer RNAtRNA, mRNAGiardia lamblia ATCC 50803EukaryaRF00005Giardia Ribosome in PRE-T Hybrid State (D2)Electron microscopy3.252023-03-22
88BSI|1|LuTransfer RNAE-site tRNAGiardia intestinalisEukaryaRF00005Giardia ribosome chimeric hybrid-like GDP+Pi bound state (B1)Electron microscopy3.42023-03-15
97A09|1|fTransfer RNAtRNAHomo sapiensEukaryaRF00005Structure of a human ABCE1-bound 43S pre-initiation complex - State IIIElectron microscopy3.52020-10-14
105T2C|1|AnTransfer RNAtRNAHomo sapiensEukaryaRF00005CryoEM structure of the human ribosome at 3.6 Angstrom resolutionElectron microscopy3.62017-01-25
116Y57|1|B4Transfer RNAP/E tRNA, mRNAHomo sapiensEukaryaRF00005Structure of human ribosome in hybrid-PRE stateElectron microscopy3.52020-04-15
124UG0|1|S6Transfer RNAHUMAN INITIATOR MET-TRNA-IHomo sapiensEukaryaRF00005STRUCTURE OF THE HUMAN 80S RIBOSOMEElectron microscopy3.62015-06-10
138BR8|1|LuTransfer RNAE-site tRNAGiardia lamblia ATCC 50803EukaryaRF00005Giardia ribosome in POST-T state (A1)Electron microscopy3.352023-03-15
148BTD|1|uTransfer RNAtRNA, mRNAGiardia lamblia ATCC 50803EukaryaRF00005Giardia Ribosome in PRE-T Hybrid State (D1)Electron microscopy4.92023-03-22
158BTD|1|vTransfer RNAtRNA, mRNAGiardia lamblia ATCC 50803EukaryaRF00005Giardia Ribosome in PRE-T Hybrid State (D1)Electron microscopy4.92023-03-22
164V6X|1|BCTransfer RNAE-tRNAHomo sapiensEukaryaRF00005Structure of the human 80S ribosomeElectron microscopy52014-07-09
176FEC|1|NTransfer RNATransfer RNA (75-MER), Messenger RNA (26-MER)Homo sapiensEukaryaRF00005Human cap-dependent 48S pre-initiation complexElectron microscopy6.32018-03-14
188BSJ|1|vTransfer RNAtRNA, mRNAGiardia intestinalisEukaryaRF00005Giardia Ribosome in PRE-T Classical State (C)Electron microscopy6.492023-03-22
198BSJ|1|uTransfer RNAtRNA, mRNAGiardia intestinalisEukaryaRF00005Giardia Ribosome in PRE-T Classical State (C)Electron microscopy6.492023-03-22

Release history

Release3.3053.3063.3073.3083.3093.3103.3113.3123.3133.3143.3153.3163.3173.3183.3193.3203.3213.3223.3233.3243.3253.3263.3273.3283.3293.3303.3313.332
Date2023-10-182023-10-252023-11-012023-11-082023-11-152023-11-242023-11-292023-12-062023-12-132023-12-202023-12-272024-01-032024-01-102024-01-172024-01-242024-01-312024-02-072024-02-142024-02-212024-02-282024-03-062024-03-132024-03-202024-03-272024-04-032024-04-102024-04-172024-04-24

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_96269.14NR_20.0_96269.133.305(18) 8BTR|1|v, 8BTR|1|u, 8BTD|1|v, 8BTD|1|u, 8BSJ|1|v, 8BSJ|1|u, 8BSI|1|Lu, 8BR8|1|Lu, 7QVP|1|B5, 7A09|1|f, 6ZP4|1|1, 6Y57|1|B4, 6QZP|1|S6, 6FEC|1|N, 5T2C|1|An, 4V6X|1|BC, 4UG0|1|S6, 4KZZ|1|j(1) 8PPL|1|Iw(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16QZP|1|S6High-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.975
24UG0|1|S6STRUCTURE OF THE HUMAN 80S RIBOSOMEELECTRON MICROSCOPY3.675
35T2C|1|AnCryoEM structure of the human ribosome at 3.6 Angstrom resolutionELECTRON MICROSCOPY3.675
48BSJ|1|uGiardia Ribosome in PRE-T Classical State (C)ELECTRON MICROSCOPY6.4975
58BR8|1|LuGiardia ribosome in POST-T state (A1)ELECTRON MICROSCOPY3.3557
68BSI|1|LuGiardia ribosome chimeric hybrid-like GDP+Pi bound state (B1)ELECTRON MICROSCOPY3.475
78BTD|1|uGiardia Ribosome in PRE-T Hybrid State (D1)ELECTRON MICROSCOPY4.975
88BTR|1|uGiardia Ribosome in PRE-T Hybrid State (D2)ELECTRON MICROSCOPY3.2575
97QVP|1|B5Human collided disome (di-ribosome) stalled on XBP1 mRNAELECTRON MICROSCOPY375
106Y57|1|B4Structure of human ribosome in hybrid-PRE stateELECTRON MICROSCOPY3.575
114V6X|1|BCStructure of the human 80S ribosomeELECTRON MICROSCOPY575
126FEC|1|NHuman cap-dependent 48S pre-initiation complexELECTRON MICROSCOPY6.375
138PPL|1|IwMERS-CoV Nsp1 bound to the human 43S pre-initiation complexELECTRON MICROSCOPY2.6567
146ZP4|1|1SARS-CoV-2 Nsp1 bound to a human 43S preinitiation ribosome complex - state 2ELECTRON MICROSCOPY2.975
157A09|1|fStructure of a human ABCE1-bound 43S pre-initiation complex - State IIIELECTRON MICROSCOPY3.575
164KZZ|1|jRabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1AX-RAY DIFFRACTION7.0375
178BSJ|1|vGiardia Ribosome in PRE-T Classical State (C)ELECTRON MICROSCOPY6.4975
188BTR|1|vGiardia Ribosome in PRE-T Hybrid State (D2)ELECTRON MICROSCOPY3.2575
198BTD|1|vGiardia Ribosome in PRE-T Hybrid State (D1)ELECTRON MICROSCOPY4.975
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