Equivalence class NR_20.0_96683.4 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5Z4J|1|B (rep) | RNA (5'-R(*UP*UP*UP*U)-3') | Drosophila melanogaster | Structure of Tailor in complex with U4 RNA | X-ray diffraction | 1.82 | 2018-10-31 | |||
| 2 | 5GMF|1|E | RNA (5'-R(P*UP*UP*UP*U)-3') | Homo sapiens | Crystal structure of monkey TLR7 in complex with guanosine and polyU | X-ray diffraction | 2.5 | 2016-11-02 | |||
| 3 | 5GMF|1|H | RNA (5'-R(P*UP*UP*UP*U)-3') | Homo sapiens | Crystal structure of monkey TLR7 in complex with guanosine and polyU | X-ray diffraction | 2.5 | 2016-11-02 | |||
| 4 | 6E4P|1|J | RNA (5'-R(P*UP*UP*UP*U)-3') | Trypanosoma brucei | Structure of the T. brucei RRM domain in complex with RNA | X-ray diffraction | 1.95 | 2018-12-12 | |||
| 5 | 5GMF|1|F | RNA (5'-R(P*UP*UP*UP*U)-3') | Homo sapiens | Crystal structure of monkey TLR7 in complex with guanosine and polyU | X-ray diffraction | 2.5 | 2016-11-02 | |||
| 6 | 5GMF|1|G | RNA (5'-R(P*UP*UP*UP*U)-3') | Homo sapiens | Crystal structure of monkey TLR7 in complex with guanosine and polyU | X-ray diffraction | 2.5 | 2016-11-02 | |||
| 7 | 5GMG|1|D | RNA (5'-R(P*UP*UP*UP*U)-3') | Homo sapiens | Crystal structure of monkey TLR7 in complex with loxoribine and polyU | X-ray diffraction | 2.6 | 2016-11-02 | |||
| 8 | 5GMG|1|C | RNA (5'-R(P*UP*UP*UP*U)-3') | Homo sapiens | Crystal structure of monkey TLR7 in complex with loxoribine and polyU | X-ray diffraction | 2.6 | 2016-11-02 | |||
| 9 | 6E4P|1|K | RNA (5'-R(P*UP*UP*UP*U)-3') | Trypanosoma brucei | Structure of the T. brucei RRM domain in complex with RNA | X-ray diffraction | 1.95 | 2018-12-12 | |||
| 10 | 3IE1|1|E | RNA (5'-R(P*UP*UP*UP*U)-3') | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-ray diffraction | 2.85 | 2009-08-04 | ||||
| 11 | 3IE1|1|H | RNA (5'-R(P*UP*UP*UP*U)-3') | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-ray diffraction | 2.85 | 2009-08-04 | ||||
| 12 | 3IE1|1|F | RNA (5'-R(P*UP*UP*UP*U)-3') | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-ray diffraction | 2.85 | 2009-08-04 | ||||
| 13 | 4DR7|1|V | 5'-R(*UP*UP*UP*U)-3' | Thermus thermophilus | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound | X-ray diffraction | 3.75 | 2012-11-14 | |||
| 14 | 3IE1|1|G | RNA (5'-R(P*UP*UP*UP*U)-3') | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-ray diffraction | 2.85 | 2009-08-04 | ||||
| 15 | 3S4G|1|C+ 3S4G|1|B | RNA (5'-R(P*UP*UP*UP*U)-3'), RNA (5'-R(P*AP*AP*A)-3') | Low Resolution Structure of STNV complexed with RNA | X-ray diffraction | 6 | 2011-08-03 | ||||
| 16 | 2QQP|1|R | RNA (5'-R(*UP*UP*UP*U)-3') | Crystal Structure of Authentic Providence Virus | X-ray diffraction | 3.8 | 2009-01-20 | ||||
| 17 | 2ZDE|1|E | RNA (5'-D(P*UP*UP*UP*U)-3') | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-ray diffraction | 2.85 | 2008-11-25 | ||||
| 18 | 2ZDE|1|F | RNA (5'-D(P*UP*UP*UP*U)-3') | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-ray diffraction | 2.85 | 2008-11-25 | ||||
| 19 | 2ZDE|1|H | RNA (5'-D(P*UP*UP*UP*U)-3') | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-ray diffraction | 2.85 | 2008-11-25 | ||||
| 20 | 2ZDE|1|G | RNA (5'-D(P*UP*UP*UP*U)-3') | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-ray diffraction | 2.85 | 2008-11-25 | ||||
| 21 | 1NB7|1|E | 5'-R(*UP*UP*UP*U)-3' | HC-J4 RNA polymerase complexed with short RNA template strand | X-ray diffraction | 2.9 | 2003-03-25 | ||||
| 22 | 1NB7|1|F | 5'-R(*UP*UP*UP*U)-3' | HC-J4 RNA polymerase complexed with short RNA template strand | X-ray diffraction | 2.9 | 2003-03-25 |
Release history
| Release | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 | 3.99 | 3.100 | 3.101 | 3.102 | 3.103 | 3.104 | 3.105 | 3.106 | 3.107 | 3.108 | 3.109 | 3.110 | 3.111 | 3.112 | 3.113 | 3.114 | 3.115 | 3.116 | 3.117 | 3.118 | 3.119 | 3.120 | 3.121 | 3.122 | 3.123 | 3.124 | 3.125 | 3.126 | 3.127 | 3.128 | 3.129 | 3.130 | 3.131 | 3.132 | 3.133 | 3.134 | 3.135 | 3.136 | 3.137 | 3.138 | 3.139 | 3.140 | 3.141 | 3.142 | 3.143 | 3.144 | 3.145 | 3.146 | 3.147 | 3.148 | 3.149 | 3.150 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-12-14 | 2018-12-21 | 2018-12-28 | 2019-01-04 | 2019-01-11 | 2019-01-18 | 2019-01-25 | 2019-02-01 | 2019-02-08 | 2019-02-15 | 2019-02-22 | 2019-03-01 | 2019-03-08 | 2019-03-15 | 2019-03-22 | 2019-03-29 | 2019-04-05 | 2019-04-12 | 2019-04-19 | 2019-04-26 | 2019-05-03 | 2019-05-10 | 2019-05-17 | 2019-05-24 | 2019-05-31 | 2019-06-07 | 2019-06-14 | 2019-06-21 | 2019-06-28 | 2019-07-05 | 2019-07-12 | 2019-07-19 | 2019-07-26 | 2019-08-02 | 2019-08-09 | 2019-08-16 | 2019-08-23 | 2019-08-28 | 2019-09-04 | 2019-09-11 | 2019-09-19 | 2019-09-25 | 2019-10-03 | 2019-10-09 | 2019-10-16 | 2019-10-23 | 2019-10-30 | 2019-11-06 | 2019-11-13 | 2019-11-20 | 2019-11-27 | 2019-12-04 | 2019-12-11 | 2019-12-18 | 2019-12-25 | 2020-01-01 | 2020-01-08 | 2020-01-15 | 2020-01-22 | 2020-01-29 | 2020-02-05 | 2020-02-12 | 2020-02-19 | 2020-02-26 | 2020-03-04 | 2020-03-11 | 2020-03-18 | 2020-03-25 | 2020-04-01 | 2020-04-08 | 2020-04-15 | 2020-04-22 | 2020-04-29 | 2020-05-06 | 2020-05-13 | 2020-05-20 | 2020-05-27 | 2020-06-03 | 2020-06-10 | 2020-06-17 | 2020-06-24 | 2020-07-01 | 2020-07-08 | 2020-07-15 | 2020-07-22 | 2020-07-29 | 2020-08-05 | 2020-08-12 | 2020-08-19 | 2020-08-26 | 2020-09-02 | 2020-09-09 | 2020-09-16 | 2020-09-23 | 2020-09-30 | 2020-10-07 | 2020-10-14 | 2020-10-21 | 2020-10-28 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_96683.4 | NR_20.0_96683.3 | 3.52 | (20) 5GMF|1|E, 4DR7|1|V, 3S4G|1|C+3S4G|1|B, 3IE1|1|H, 3IE1|1|G, 3IE1|1|F, 3IE1|1|E, 2ZDE|1|H, 2ZDE|1|G, 2ZDE|1|F, 2ZDE|1|E, 5Z4J|1|B, 2QQP|1|R, 5GMG|1|D, 1NB7|1|F, 5GMG|1|C, 1NB7|1|E, 5GMF|1|H, 5GMF|1|G, 5GMF|1|F | (2) 6E4P|1|J, 6E4P|1|K | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_20.0_96683.4 | NR_20.0_96683.5 | 3.151 | (18) 5Z4J|1|B, 3IE1|1|E, 3S4G|1|C+3S4G|1|B, 5GMF|1|G, 6E4P|1|K, 1NB7|1|F, 3IE1|1|G, 5GMF|1|E, 5GMG|1|C, 6E4P|1|J, 1NB7|1|E, 3IE1|1|F, 4DR7|1|V, 5GMF|1|H, 2QQP|1|R, 3IE1|1|H, 5GMF|1|F, 5GMG|1|D | (4) 2ZDE|1|G, 2ZDE|1|H, 2ZDE|1|E, 2ZDE|1|F | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 6E4P|1|J | Structure of the T. brucei RRM domain in complex with RNA | X-RAY DIFFRACTION | 1.95 | 3 |
| 2 | 6E4P|1|K | Structure of the T. brucei RRM domain in complex with RNA | X-RAY DIFFRACTION | 1.95 | 3 |
| 3 | 5GMG|1|D | Crystal structure of monkey TLR7 in complex with loxoribine and polyU | X-RAY DIFFRACTION | 2.6 | 4 |
| 4 | 5GMF|1|H | Crystal structure of monkey TLR7 in complex with guanosine and polyU | X-RAY DIFFRACTION | 2.5 | 4 |
| 5 | 5GMF|1|F | Crystal structure of monkey TLR7 in complex with guanosine and polyU | X-RAY DIFFRACTION | 2.5 | 4 |
| 6 | 5GMF|1|E | Crystal structure of monkey TLR7 in complex with guanosine and polyU | X-RAY DIFFRACTION | 2.5 | 4 |
| 7 | 5GMF|1|G | Crystal structure of monkey TLR7 in complex with guanosine and polyU | X-RAY DIFFRACTION | 2.5 | 4 |
| 8 | 5GMG|1|C | Crystal structure of monkey TLR7 in complex with loxoribine and polyU | X-RAY DIFFRACTION | 2.6 | 4 |
| 9 | 3IE1|1|H | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-RAY DIFFRACTION | 2.85 | 4 |
| 10 | 2ZDE|1|H | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-RAY DIFFRACTION | 2.85 | 4 |
| 11 | 2ZDE|1|E | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-RAY DIFFRACTION | 2.85 | 4 |
| 12 | 3IE1|1|E | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-RAY DIFFRACTION | 2.85 | 4 |
| 13 | 3IE1|1|F | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-RAY DIFFRACTION | 2.85 | 4 |
| 14 | 2ZDE|1|F | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-RAY DIFFRACTION | 2.85 | 4 |
| 15 | 5Z4J|1|B | Structure of Tailor in complex with U4 RNA | X-RAY DIFFRACTION | 1.82 | 4 |
| 16 | 4DR7|1|V | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound | X-RAY DIFFRACTION | 3.75 | 4 |
| 17 | 3S4G|1|C+3S4G|1|B | Low Resolution Structure of STNV complexed with RNA | X-RAY DIFFRACTION | 6 | 4 |
| 18 | 2QQP|1|R | Crystal Structure of Authentic Providence Virus | X-RAY DIFFRACTION | 3.8 | 4 |
| 19 | 3IE1|1|G | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-RAY DIFFRACTION | 2.85 | 2 |
| 20 | 1NB7|1|F | HC-J4 RNA polymerase complexed with short RNA template strand | X-RAY DIFFRACTION | 2.9 | 4 |
| 21 | 1NB7|1|E | HC-J4 RNA polymerase complexed with short RNA template strand | X-RAY DIFFRACTION | 2.9 | 4 |
| 22 | 2ZDE|1|G | Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA | X-RAY DIFFRACTION | 2.85 | 2 |