#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16TPQ|1|V (rep)5S ribosomal RNApre-5S rRNABacillus subtilisBacteriaRF00001RNase M5 bound to 50S ribosome with precursor 5S rRNAElectron microscopy3.072020-09-30
28BUU|1|B5S ribosomal RNA5S rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF00001ARE-ABCF VmlR2 bound to a 70S ribosomeElectron microscopy2.92023-04-05
37AQC|1|B5S ribosomal RNA5S ribosomal RNABacillus subtilis subsp. subtilis str. 168BacteriaRF00001Structure of the bacterial RQC complex (Decoding State)Electron microscopy2.992020-11-25
47AS8|1|B5S ribosomal RNA5s rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF00001Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabOElectron microscopy2.92020-12-09
57AQD|1|B5S ribosomal RNA5S ribosomal RNABacillus subtilis subsp. subtilis str. 168BacteriaRF00001Structure of the bacterial RQC complex (Translocating State)Electron microscopy3.12020-11-25
66TNN|1|V5S ribosomal RNA5S rRNABacillus subtilisBacteriaRF00001Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNAElectron microscopy3.072020-09-30
76HA1|1|B5S ribosomal RNA5S ribosomal RNABacillus subtilisBacteriaRF00001Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycinElectron microscopy3.12018-08-29
87OPE|1|B5S ribosomal RNA5S rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF00001RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)Electron microscopy3.22021-07-21
97O5B|1|Y5S ribosomal RNA5S rRNA (112-MER)Bacillus subtilis subsp. subtilis str. 168BacteriaRF00001Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP boundElectron microscopy3.332022-02-02
107QV2|1|B5S ribosomal RNA5S ribosomal RNABacillus subtilis subsp. subtilis str. 168BacteriaRF00001Bacillus subtilis collided disome (Collided 70S)Electron microscopy3.52022-03-09
117AS9|1|B5S ribosomal RNA5S rRNABacillus subtilis subsp. subtilis str. 168BacteriaRF00001Bacillus subtilis ribosome-associated quality control complex state A. Ribosomal 50S subunit with peptidyl tRNA in the A/P position and RqcH.Electron microscopy3.52020-12-23
127QV1|1|B5S ribosomal RNA5S ribosomal RNABacillus subtilis subsp. subtilis str. 168BacteriaRF00001Bacillus subtilis collided disome (Leading 70S)Electron microscopy3.52022-03-09
136HA8|1|B5S ribosomal RNA5S rRNABacillus subtilisBacteriaRF00001Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosomeElectron microscopy3.52018-08-29
146PPF|1|B5S ribosomal RNA5S rRNABacillus subtilisBacteriaRF00001Bacterial 45SRbgA ribosomal particle class BElectron microscopy3.42019-09-18
155NJT|1|V5S ribosomal RNA5S ribosomal RNABacillus subtilisBacteriaRF00001Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.Electron microscopy3.82017-06-14
163J9W|1|BB5S ribosomal RNA5S ribosomal RNABacillus subtilisBacteriaRF00001Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complexElectron microscopy3.92015-04-29
176HTQ|1|B5S ribosomal RNA5S ribosomal RNABacillus subtilisBacteriaRF00001Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosomeElectron microscopy4.52019-10-23
186PPK|1|B5S ribosomal RNA5S rRNABacillus subtilisBacteriaRF00001RbgA+45SRbgA complexElectron microscopy4.42019-09-18
197QGU|1|B5S ribosomal RNA5S rRNABacillus subtilisBacteriaRF00001Structure of the B. subtilis disome - stalled 70S ribosomeElectron microscopy4.752022-03-16
207QV3|1|B5S ribosomal RNA5S ribosomal RNABacillus subtilis subsp. subtilis str. 168BacteriaRF00001Bacillus subtilis MutS2-collided disome complex (MutS2 conf.2; Leading 70S)Electron microscopy5.142022-03-09
217QH4|1|B5S ribosomal RNA5S rRNABacillus subtilisBacteriaRF00001Structure of the B. subtilis disome - collided 70S ribosomeElectron microscopy5.452022-03-16
223J3V|1|B5S ribosomal RNAribosome RNA 5SBacillus subtilisBacteriaRF00001Atomic model of the immature 50S subunit from Bacillus subtilis (state I-a)Electron microscopy13.32013-06-12

Release history

Release3.2773.2783.2793.2803.2813.2823.2833.2843.2853.2863.2873.2883.2893.2903.2913.2923.2933.2943.2953.2963.2973.2983.2993.3003.3013.3023.3033.3043.3053.3063.3073.3083.3093.3103.3113.3123.3133.314
Date2023-04-052023-04-122023-04-192023-04-262023-05-032023-05-102023-05-172023-05-242023-05-312023-06-072023-06-142023-06-212023-06-282023-07-052023-07-122023-07-192023-07-262023-08-022023-08-092023-08-162023-08-232023-08-302023-09-062023-09-132023-09-202023-09-272023-10-042023-10-112023-10-182023-10-252023-11-012023-11-082023-11-152023-11-242023-11-292023-12-062023-12-132023-12-20

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Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16PPK|1|BRbgA+45SRbgA complexELECTRON MICROSCOPY4.4112
26PPF|1|BBacterial 45SRbgA ribosomal particle class BELECTRON MICROSCOPY3.4112
36TNN|1|VMini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNAELECTRON MICROSCOPY3.07116
46TPQ|1|VRNase M5 bound to 50S ribosome with precursor 5S rRNAELECTRON MICROSCOPY3.07123
57AQD|1|BStructure of the bacterial RQC complex (Translocating State)ELECTRON MICROSCOPY3.1112
67AQC|1|BStructure of the bacterial RQC complex (Decoding State)ELECTRON MICROSCOPY2.99112
77QH4|1|BStructure of the B. subtilis disome - collided 70S ribosomeELECTRON MICROSCOPY5.45112
87QGU|1|BStructure of the B. subtilis disome - stalled 70S ribosomeELECTRON MICROSCOPY4.75112
93J9W|1|BBCryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complexELECTRON MICROSCOPY3.9112
105NJT|1|VStructure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.ELECTRON MICROSCOPY3.8112
116HTQ|1|BStringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosomeELECTRON MICROSCOPY4.5112
127AS9|1|BBacillus subtilis ribosome-associated quality control complex state A. Ribosomal 50S subunit with peptidyl tRNA in the A/P position and RqcH.ELECTRON MICROSCOPY3.5112
137AS8|1|BBacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabOELECTRON MICROSCOPY2.9112
147OPE|1|BRqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)ELECTRON MICROSCOPY3.2112
158BUU|1|BARE-ABCF VmlR2 bound to a 70S ribosomeELECTRON MICROSCOPY2.9112
166HA8|1|BCryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosomeELECTRON MICROSCOPY3.5112
176HA1|1|BCryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycinELECTRON MICROSCOPY3.1112
187QV2|1|BBacillus subtilis collided disome (Collided 70S)ELECTRON MICROSCOPY3.5112
197QV3|1|BBacillus subtilis MutS2-collided disome complex (MutS2 conf.2; Leading 70S)ELECTRON MICROSCOPY5.14112
207QV1|1|BBacillus subtilis collided disome (Leading 70S)ELECTRON MICROSCOPY3.5112
217O5B|1|YCryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP boundELECTRON MICROSCOPY3.33112
223J3V|1|BAtomic model of the immature 50S subunit from Bacillus subtilis (state I-a)ELECTRON MICROSCOPY13.3119
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