#PDBTitleRNA source organismCompoundsMethodResolutionDate
14MSR|A (rep)RNA 10mer duplex with six 2'-5'-linkagesRNA 10mer duplex with six 2'-5'-linkages, RNA 10mer duplex with six 2'-5'-linkagesX-RAY DIFFRACTION1.22014-02-12
21DI2|CCRYSTAL STRUCTURE OF A DSRNA-BINDING DOMAIN COMPLEXED WITH DSRNA: MOLECULAR BASIS OF DOUBLE-STRANDED RNA-PROTEIN INTERACTIONSDOUBLE STRANDED RNA BINDING PROTEIN A, DOUBLE STRANDED RNA BINDING PROTEIN A, RNA (5'-R(*GP*GP*CP*GP*CP*GP*CP*GP*CP*C)-3'), RNA (5'-R(*GP*GP*CP*GP*CP*GP*CP*GP*CP*C)-3'), RNA (5'-R(*GP*GP*CP*GP*CP*GP*CP*GP*CP*C)-3'), RNA (5'-R(*GP*GP*CP*GP*CP*GP*CP*GP*CP*C)-3')X-RAY DIFFRACTION1.91999-12-02
31FIX|ATHE STRUCTURE OF AN RNA/DNA HYBRID: A SUBSTRATE OF THE RIBONUCLEASE ACTIVITY OF HIV-1 REVERSE TRANSCRIPTASERNA (5'-R(*UP*UP*CP*GP*GP*GP*CP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*GP*CP*CP*CP*GP*AP*A)-3')X-RAY DIFFRACTION2.31996-12-11
41RC7|BCrystal structure of RNase III Mutant E110K from Aquifex Aeolicus complexed with ds-RNA at 2.15 Angstrom ResolutionRibonuclease III, 5'-R(*GP*GP*CP*GP*CP*GP*CP*GP*CP*C)-3', 5'-R(*GP*GP*CP*GP*CP*GP*CP*GP*CP*C)-3', 5'-R(*GP*GP*CP*GP*CP*GP*CP*GP*CP*C)-3', 5'-R(*GP*GP*CP*GP*CP*GP*CP*GP*CP*C)-3'X-RAY DIFFRACTION2.152004-03-30
52YKG|CStructural insights into RNA recognition by RIG-IHomo sapiensPROBABLE ATP-DEPENDENT RNA HELICASE DDX58, 5'-R(*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP)-3', 5'-R(*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP)-3'X-RAY DIFFRACTION2.52011-10-26
63ADL|BStructure of TRBP2 and its molecule implications for miRNA processingRISC-loading complex subunit TARBP2, RNA (5'-R(P*CP*GP*CP*GP*CP*GP*CP*GP*CP*G)-3'), RNA (5'-R(P*CP*GP*CP*GP*CP*GP*CP*GP*CP*G)-3')X-RAY DIFFRACTION2.22010-05-26
73VYX|BStructural insights into RISC assembly facilitated by dsRNA binding domains of human RNA helicase (DHX9)ATP-dependent RNA helicase A, RNA (5'-R(P*GP*CP*GP*CP*GP*CP*GP*CP*GP*C)-3'), RNA (5'-R(P*GP*CP*GP*CP*GP*CP*GP*CP*GP*C)-3')X-RAY DIFFRACTION2.292013-02-13
83VYY|CStructural insights into RISC assembly facilitated by dsRNA binding domains of human RNA helicase A (DHX9)ATP-dependent RNA helicase A, ATP-dependent RNA helicase A, RNA (5'-R(*GP*CP*GP*CP*GP*CP*GP*CP*GP*C)-3'), RNA (5'-R(*GP*CP*GP*CP*GP*CP*GP*CP*GP*C)-3'), RNA (5'-R(*GP*CP*GP*CP*GP*CP*GP*CP*GP*C)-3'), RNA (5'-R(*GP*CP*GP*CP*GP*CP*GP*CP*GP*C)-3'), RNA (5'-R(*GP*CP*GP*CP*GP*CP*GP*CP*GP*C)-3')X-RAY DIFFRACTION2.92013-02-13
93ZD6|CSnapshot 1 of RIG-I scanning on RNA duplexsynthetic constructPROBABLE ATP-DEPENDENT RNA HELICASE DDX58, RNA DUPLEX, RNA DUPLEXX-RAY DIFFRACTION2.82013-08-07
103ZD7|CSnapshot 3 of RIG-I scanning on RNA duplexsynthetic constructPROBABLE ATP-DEPENDENT RNA HELICASE DDX58, RNA DUPLEX, RNA DUPLEXX-RAY DIFFRACTION2.52013-08-07
114BPB|CSTRUCTURAL INSIGHTS INTO RNA RECOGNITION BY RIG-IHomo sapiensPROBABLE ATP-DEPENDENT RNA HELICASE DDX58, 5'-R(*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP)-3', 5'-R(*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP)-3'X-RAY DIFFRACTION2.582013-06-19
124MSB|ARNA 10mer duplex with two 2'-5'-linkagesRNA 10mer duplex with two 2'-5'-linkages, RNA 10mer duplex with two 2'-5'-linkages, RNA 10mer duplex with two 2'-5'-linkages, RNA 10mer duplex with two 2'-5'-linkages, RNA 10mer duplex with two 2'-5'-linkages, RNA 10mer duplex with two 2'-5'-linkagesX-RAY DIFFRACTION1.552014-02-12

Release history

Release1.491.501.511.521.531.541.551.561.571.581.591.601.611.621.631.641.651.661.671.681.691.701.711.721.731.741.751.761.771.781.791.801.811.821.831.841.851.861.871.881.89
Date2014-02-152014-02-222014-03-012014-03-082014-03-172014-03-222014-03-292014-04-052014-04-122014-04-192014-04-262014-05-032014-05-102014-05-172014-05-312014-06-072014-06-132014-06-202014-06-272014-07-042014-07-182014-07-252014-08-012014-08-082014-08-152014-08-222014-08-292014-09-052014-09-122014-09-192014-09-262014-10-032014-10-102014-10-172014-10-242014-10-312014-11-072014-11-142014-11-212014-11-282014-12-05

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This classDescendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14MSB|ARNA 10mer duplex with two 2'-5'-linkagesX-RAY DIFFRACTION1.5510
21DI2|CCRYSTAL STRUCTURE OF A DSRNA-BINDING DOMAIN COMPLEXED WITH DSRNA: MOLECULAR BASIS OF DOUBLE-STRANDED RNA-PROTEIN INTERACTIONSX-RAY DIFFRACTION1.910
33ADL|BStructure of TRBP2 and its molecule implications for miRNA processingX-RAY DIFFRACTION2.210
41FIX|ATHE STRUCTURE OF AN RNA/DNA HYBRID: A SUBSTRATE OF THE RIBONUCLEASE ACTIVITY OF HIV-1 REVERSE TRANSCRIPTASEX-RAY DIFFRACTION2.310
51RC7|BCrystal structure of RNase III Mutant E110K from Aquifex Aeolicus complexed with ds-RNA at 2.15 Angstrom ResolutionX-RAY DIFFRACTION2.1510
63ZD7|CSnapshot 3 of RIG-I scanning on RNA duplexX-RAY DIFFRACTION2.510
74BPB|CSTRUCTURAL INSIGHTS INTO RNA RECOGNITION BY RIG-IX-RAY DIFFRACTION2.5810
82YKG|CStructural insights into RNA recognition by RIG-IX-RAY DIFFRACTION2.510
93ZD6|CSnapshot 1 of RIG-I scanning on RNA duplexX-RAY DIFFRACTION2.810
103VYY|CStructural insights into RISC assembly facilitated by dsRNA binding domains of human RNA helicase A (DHX9)X-RAY DIFFRACTION2.910
114MSR|ARNA 10mer duplex with six 2'-5'-linkagesX-RAY DIFFRACTION1.210
123VYX|BStructural insights into RISC assembly facilitated by dsRNA binding domains of human RNA helicase (DHX9)X-RAY DIFFRACTION2.2910