Equivalence class NR_20.0_99632.4 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6FYY|1|1 (rep) | Transfer RNA | tRNAi, mRNA (31-MER) | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2) | Electron microscopy | 3.02 | 2018-12-05 |
| 2 | 6FYX|1|1 | Transfer RNA | tRNAi, mRNA (31-MER) | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1) | Electron microscopy | 3.5 | 2018-12-05 |
| 3 | 1YFG|1|A | Transfer RNA | YEAST INITIATOR TRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | YEAST INITIATOR TRNA | X-ray diffraction | 3 | 1997-09-03 |
| 4 | 5OA3|1|1 | Transfer RNA | initiator Met-tRNA-i | Saccharomyces cerevisiae | Eukarya | RF00005 | Human 40S-eIF2D-re-initiation complex | Electron microscopy | 4.2 | 2017-08-09 |
| 5 | 3J81|1|1 | Transfer RNA | Met-tRNAi, mRNA | RF00005 | CryoEM structure of a partial yeast 48S preinitiation complex | Electron microscopy | 4 | 2014-11-05 | ||
| 6 | 6GSN|1|1 | Transfer RNA | tRNAi (75-MER), mRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of a partial yeast 48S preinitiation complex in closed conformation | Electron microscopy | 5.75 | 2019-06-26 |
| 7 | 3JAQ|1|1 | Transfer RNA | Met-tRNAi, mRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Structure of a partial yeast 48S preinitiation complex in open conformation | Electron microscopy | 6 | 2015-08-12 |
Parents
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 3J81|1|1 | CryoEM structure of a partial yeast 48S preinitiation complex | ELECTRON MICROSCOPY | 4 | 74 |
| 2 | 6GSN|1|1 | Structure of a partial yeast 48S preinitiation complex in closed conformation | ELECTRON MICROSCOPY | 5.75 | 75 |
| 3 | 6FYY|1|1 | Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2) | ELECTRON MICROSCOPY | 3.02 | 64 |
| 4 | 6FYX|1|1 | Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1) | ELECTRON MICROSCOPY | 3.5 | 64 |
| 5 | 3JAQ|1|1 | Structure of a partial yeast 48S preinitiation complex in open conformation | ELECTRON MICROSCOPY | 6 | 64 |
| 6 | 1YFG|1|A | YEAST INITIATOR TRNA | X-RAY DIFFRACTION | 3 | 64 |
| 7 | 5OA3|1|1 | Human 40S-eIF2D-re-initiation complex | ELECTRON MICROSCOPY | 4.2 | 75 |