Equivalence class NR_3.0_01949.4 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5UED|1|A+ 5UED|1|B (rep) | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | Synthetic | RNA primer-template complex with guanosine dinucleotide ligand G(5')pp(5')G | X-ray diffraction | 1.5 | 2017-07-05 | ||
| 2 | 6C8J|1|A+ 6C8J|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | Synthetic | RNA-activated 2-AIpG monomer complex, 15 min soaking | X-ray diffraction | 1.5 | 2018-05-30 | ||
| 3 | 7KUP|1|A+ 7KUP|1|B | 5'-R((LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(OMG))-3' | synthetic construct | Synthetic | 2'-OMe modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G | X-ray diffraction | 1.44 | 2021-09-08 | ||
| 4 | 7KUK|1|A+ 7KUK|1|B | RNA (5'-R(*(LKC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | Synthetic | High resolution RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G | X-ray diffraction | 1.67 | 2021-09-08 | ||
| 5 | 7KUM|1|A+ 7KUM|1|B | 5'-R((LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(LCG)-3' | synthetic construct | Synthetic | LNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G | X-ray diffraction | 1.714 | 2021-09-08 | ||
| 6 | 7KUL|1|A+ 7KUL|1|B | DNA/RNA (5'-R(*(LKC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*C)-D(P*G)-3') | synthetic construct | Synthetic | DNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G | X-ray diffraction | 1.64 | 2021-09-08 | ||
| 7 | 6C8D|1|A+ 6C8D|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | Synthetic | RNA-dGMP complex with Mg ion | X-ray diffraction | 1.92 | 2018-05-30 | ||
| 8 | 6C8I|1|A+ 6C8I|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | Synthetic | RNA-activated 2-AIpG monomer complex, 5 min soaking | X-ray diffraction | 1.77 | 2018-05-30 | ||
| 9 | 5UEE|1|A+ 5UEE|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | Synthetic | RNA primer-template complex with guanosine dinucleotide ligand G(5')ppp(5')G | X-ray diffraction | 1.9 | 2017-07-05 | ||
| 10 | 6C8L|1|A+ 6C8L|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | Synthetic | RNA-activated 2-AIpG monomer complex, 1h soaking | X-ray diffraction | 2.25 | 2018-05-30 | ||
| 11 | 6C8E|1|A+ 6C8E|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | Synthetic | RNA-imidazolium-bridged intermediate complex, 4h soaking | X-ray diffraction | 1.8 | 2018-05-30 | ||
| 12 | 6U8U|1|A+ 6U8U|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | Synthetic | RNA duplex bound with TNA 3'-3' imidazolium dimer | X-ray diffraction | 2.4 | 2020-12-09 | ||
| 13 | 5UEF|1|A+ 5UEF|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | Synthetic | RNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligand | X-ray diffraction | 2.1 | 2017-07-05 | ||
| 14 | 7KUO|1|A+ 7KUO|1|B | RNA (5'-R((LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(GFL))-3') | synthetic construct | Synthetic | FANA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G | X-ray diffraction | 2.281 | 2021-09-08 | ||
| 15 | 6C8K|1|A+ 6C8K|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | Synthetic | RNA-activated 2-AIpG monomer complex, 30 min soaking | X-ray diffraction | 2.26 | 2018-05-30 | ||
| 16 | 6CAB|1|A+ 6CAB|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | Synthetic | RNA-dGMP complex with Sr ion | X-ray diffraction | 2.5 | 2018-05-30 | ||
| 17 | 6OWL|1|A | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*R)-3') | synthetic construct | Synthetic | RNA oligonucleotides with 3'-arabino guanosine co-crystallized with GMP | X-ray diffraction | 2 | 2020-02-26 | ||
| 18 | 5UEG|1|A+ 5UEG|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | Synthetic | RNA primer-template complex with guanosine dinucleotide G(5')pppp(5')G ligand | X-ray diffraction | 2.6 | 2017-07-05 | ||
| 19 | 5UEG|1|C+ 5UEG|1|D | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*GP*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | Synthetic | RNA primer-template complex with guanosine dinucleotide G(5')pppp(5')G ligand | X-ray diffraction | 2.6 | 2017-07-05 |
Release history
| Release | 3.195 | 3.196 | 3.197 | 3.198 | 3.199 | 3.200 | 3.201 | 3.202 | 3.203 | 3.204 | 3.205 | 3.206 | 3.207 | 3.208 | 3.209 | 3.210 | 3.211 | 3.212 | 3.213 | 3.214 | 3.215 | 3.216 | 3.217 | 3.218 | 3.219 | 3.220 | 3.221 | 3.222 | 3.223 | 3.224 | 3.225 | 3.226 | 3.227 | 3.228 | 3.229 | 3.230 | 3.231 | 3.232 | 3.233 | 3.234 | 3.235 | 3.236 | 3.237 | 3.238 | 3.239 | 3.240 | 3.241 | 3.242 | 3.243 | 3.244 | 3.245 | 3.246 | 3.247 | 3.248 | 3.249 | 3.250 | 3.251 | 3.252 | 3.253 | 3.254 | 3.255 | 3.256 | 3.257 | 3.258 | 3.259 | 3.260 | 3.261 | 3.262 | 3.263 | 3.264 | 3.265 | 3.266 | 3.267 | 3.268 | 3.269 | 3.270 | 3.271 | 3.272 | 3.273 | 3.274 | 3.275 | 3.276 | 3.277 | 3.278 | 3.279 | 3.280 |
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| Date | 2021-09-08 | 2021-09-15 | 2021-09-22 | 2021-09-29 | 2021-10-06 | 2021-10-13 | 2021-10-20 | 2021-10-27 | 2021-11-03 | 2021-11-10 | 2021-11-17 | 2021-11-24 | 2021-12-01 | 2021-12-08 | 2021-12-15 | 2021-12-22 | 2021-12-29 | 2022-01-05 | 2022-01-12 | 2022-01-19 | 2022-01-26 | 2022-02-02 | 2022-02-09 | 2022-02-16 | 2022-02-23 | 2022-03-02 | 2022-03-09 | 2022-03-16 | 2022-03-23 | 2022-03-30 | 2022-04-06 | 2022-04-13 | 2022-04-20 | 2022-04-27 | 2022-05-04 | 2022-05-11 | 2022-05-18 | 2022-05-25 | 2022-06-01 | 2022-06-08 | 2022-06-15 | 2022-06-22 | 2022-06-29 | 2022-07-06 | 2022-07-13 | 2022-07-20 | 2022-07-27 | 2022-08-03 | 2022-08-10 | 2022-08-17 | 2022-08-24 | 2022-08-31 | 2022-09-07 | 2022-09-14 | 2022-09-21 | 2022-09-28 | 2022-10-05 | 2022-10-12 | 2022-10-19 | 2022-10-26 | 2022-11-02 | 2022-11-09 | 2022-11-16 | 2022-11-23 | 2022-11-30 | 2022-12-07 | 2022-12-14 | 2022-12-21 | 2022-12-28 | 2023-01-04 | 2023-01-11 | 2023-01-18 | 2023-01-25 | 2023-02-01 | 2023-02-08 | 2023-02-15 | 2023-02-22 | 2023-03-01 | 2023-03-08 | 2023-03-15 | 2023-03-22 | 2023-03-29 | 2023-04-05 | 2023-04-12 | 2023-04-19 | 2023-04-26 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.0_01949.4 | NR_3.0_01949.3 | 3.195 | (14) 6CAB|1|A+6CAB|1|B, 6C8D|1|A+6C8D|1|B, 5UEG|1|C+5UEG|1|D, 6C8L|1|A+6C8L|1|B, 5UEG|1|A+5UEG|1|B, 6C8K|1|A+6C8K|1|B, 5UEF|1|A+5UEF|1|B, 6C8J|1|A+6C8J|1|B, 5UEE|1|A+5UEE|1|B, 6C8I|1|A+6C8I|1|B, 6U8U|1|A+6U8U|1|B, 5UED|1|A+5UED|1|B, 6C8E|1|A+6C8E|1|B, 6OWL|1|A | (5) 7KUO|1|A+7KUO|1|B, 7KUL|1|A+7KUL|1|B, 7KUM|1|A+7KUM|1|B, 7KUK|1|A+7KUK|1|B, 7KUP|1|A+7KUP|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7KUO|1|A+7KUO|1|B | FANA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G | X-RAY DIFFRACTION | 2.281 | 9 |
| 2 | 6CAB|1|A+6CAB|1|B | RNA-dGMP complex with Sr ion | X-RAY DIFFRACTION | 2.5 | 12 |
| 3 | 6C8L|1|A+6C8L|1|B | RNA-activated 2-AIpG monomer complex, 1h soaking | X-RAY DIFFRACTION | 2.25 | 10 |
| 4 | 6C8K|1|A+6C8K|1|B | RNA-activated 2-AIpG monomer complex, 30 min soaking | X-RAY DIFFRACTION | 2.26 | 10 |
| 5 | 7KUM|1|A+7KUM|1|B | LNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G | X-RAY DIFFRACTION | 1.714 | 9 |
| 6 | 5UEE|1|A+5UEE|1|B | RNA primer-template complex with guanosine dinucleotide ligand G(5')ppp(5')G | X-RAY DIFFRACTION | 1.9 | 11 |
| 7 | 7KUK|1|A+7KUK|1|B | High resolution RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G | X-RAY DIFFRACTION | 1.67 | 10 |
| 8 | 7KUP|1|A+7KUP|1|B | 2'-OMe modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G | X-RAY DIFFRACTION | 1.44 | 9 |
| 9 | 6C8E|1|A+6C8E|1|B | RNA-imidazolium-bridged intermediate complex, 4h soaking | X-RAY DIFFRACTION | 1.8 | 10 |
| 10 | 7KUL|1|A+7KUL|1|B | DNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G | X-RAY DIFFRACTION | 1.64 | 9 |
| 11 | 6C8J|1|A+6C8J|1|B | RNA-activated 2-AIpG monomer complex, 15 min soaking | X-RAY DIFFRACTION | 1.5 | 10 |
| 12 | 6C8D|1|A+6C8D|1|B | RNA-dGMP complex with Mg ion | X-RAY DIFFRACTION | 1.92 | 10 |
| 13 | 5UEG|1|C+5UEG|1|D | RNA primer-template complex with guanosine dinucleotide G(5')pppp(5')G ligand | X-RAY DIFFRACTION | 2.6 | 11 |
| 14 | 5UEG|1|A+5UEG|1|B | RNA primer-template complex with guanosine dinucleotide G(5')pppp(5')G ligand | X-RAY DIFFRACTION | 2.6 | 11 |
| 15 | 5UEF|1|A+5UEF|1|B | RNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligand | X-RAY DIFFRACTION | 2.1 | 11 |
| 16 | 5UED|1|A+5UED|1|B | RNA primer-template complex with guanosine dinucleotide ligand G(5')pp(5')G | X-RAY DIFFRACTION | 1.5 | 11 |
| 17 | 6C8I|1|A+6C8I|1|B | RNA-activated 2-AIpG monomer complex, 5 min soaking | X-RAY DIFFRACTION | 1.77 | 10 |
| 18 | 6U8U|1|A+6U8U|1|B | RNA duplex bound with TNA 3'-3' imidazolium dimer | X-RAY DIFFRACTION | 2.4 | 10 |
| 19 | 6OWL|1|A | RNA oligonucleotides with 3'-arabino guanosine co-crystallized with GMP | X-RAY DIFFRACTION | 2 | 9 |