Equivalence class NR_3.0_03510.30 Obsolete
| # | IFE | Compound(s) | RNA source organism | Title | Method | Resolution | Date |
|---|---|---|---|---|---|---|---|
| 1 | 4V88|1|A6 (rep) | 18S rRNA | Saccharomyces cerevisiae | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 2014-07-09 |
| 2 | 5TBW|1|sR | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2017-07-26 |
| 3 | 4V88|1|A2 | 18S RIBOSOMAL RNA | Saccharomyces cerevisiae | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 2014-07-09 |
| 4 | 5TBW|1|A | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2017-07-26 |
| 5 | 6T4Q|1|C2 | 18S rRNA | Saccharomyces cerevisiae | Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination. | ELECTRON MICROSCOPY | 2.6 | 2019-12-25 |
| 6 | 4U4R|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 2014-10-22 |
| 7 | 6TB3|1|2 | Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA | Saccharomyces cerevisiae | yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex | ELECTRON MICROSCOPY | 2.8 | 2020-04-22 |
| 8 | 6SNT|1|2 | Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA | Saccharomyces cerevisiae | Yeast 80S ribosome stalled on SDD1 mRNA. | ELECTRON MICROSCOPY | 2.8 | 2020-03-04 |
| 9 | 4U3U|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 2014-10-22 |
| 10 | 4U4R|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 2014-10-22 |
| 11 | 4U3U|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 2014-10-22 |
| 12 | 4U3M|1|6 | 18S rRNA | Saccharomyces cerevisiae | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
| 13 | 4U4Q|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
| 14 | 4U4U|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
| 15 | 4U52|1|6 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
| 16 | 4U3M|1|2 | 18S rRNA | Saccharomyces cerevisiae | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
| 17 | 4U52|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
| 18 | 4U4U|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
| 19 | 4U4Q|1|2 | 18S ribosomal RNA | Saccharomyces cerevisiae | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 2014-10-22 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.0_03510.30 | NR_3.0_03510.29 | 3.123 | (18) 6T4Q|1|C2, 6SNT|1|2, 5TBW|1|sR, 5TBW|1|A, 4V88|1|A6, 4V88|1|A2, 4U52|1|6, 4U52|1|2, 4U4U|1|6, 4U4U|1|2, 4U4R|1|6, 4U4R|1|2, 4U4Q|1|6, 4U4Q|1|2, 4U3U|1|6, 4U3U|1|2, 4U3M|1|6, 4U3M|1|2 | (1) 6TB3|1|2 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.0_03510.30 | NR_3.0_03510.31 | 3.137 | (19) 4U3M|1|2, 6T4Q|1|C2, 6SNT|1|2, 5TBW|1|sR, 5TBW|1|A, 4V88|1|A6, 4V88|1|A2, 4U52|1|6, 4U52|1|2, 4U4U|1|6, 4U4U|1|2, 4U4R|1|6, 4U4R|1|2, 4U4Q|1|6, 4U4Q|1|2, 4U3U|1|6, 4U3U|1|2, 4U3M|1|6, 6TB3|1|2 | (0) | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5TBW|1|A | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1781 |
| 2 | 4U3M|1|2 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 |
| 3 | 4U4R|1|2 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 1750 |
| 4 | 4U3U|1|2 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 1750 |
| 5 | 4V88|1|A2 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 1768 |
| 6 | 4U4U|1|2 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 |
| 7 | 4U4Q|1|2 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 |
| 8 | 4U52|1|2 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 |
| 9 | 6TB3|1|2 | yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex | ELECTRON MICROSCOPY | 2.8 | 1771 |
| 10 | 6SNT|1|2 | Yeast 80S ribosome stalled on SDD1 mRNA. | ELECTRON MICROSCOPY | 2.8 | 1771 |
| 11 | 6T4Q|1|C2 | Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination. | ELECTRON MICROSCOPY | 2.6 | 1771 |
| 12 | 4U52|1|6 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 |
| 13 | 4U4Q|1|6 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 |
| 14 | 4U4U|1|6 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 |
| 15 | 4V88|1|A6 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 1770 |
| 16 | 4U3U|1|6 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 1795 |
| 17 | 4U4R|1|6 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 1795 |
| 18 | 4U3M|1|6 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 |
| 19 | 5TBW|1|sR | Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1783 |