Equivalence class NR_3.0_03510.5 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4V88|1|A6 (rep) | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-ray diffraction | 3 | 2014-07-09 |
| 2 | 4U4R|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-ray diffraction | 2.8 | 2014-10-22 |
| 3 | 4U4Q|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 4 | 4U3U|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-ray diffraction | 2.9 | 2014-10-22 |
| 5 | 4U52|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 6 | 4U4U|1|6 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 7 | 4V88|1|A2 | Small subunit ribosomal RNA | 18S RIBOSOMAL RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-ray diffraction | 3 | 2014-07-09 |
| 8 | 4U4R|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-ray diffraction | 2.8 | 2014-10-22 |
| 9 | 4U3U|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-ray diffraction | 2.9 | 2014-10-22 |
| 10 | 4U4Q|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 11 | 4U4U|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 12 | 4U52|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 13 | 4U3M|1|6 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
| 14 | 4U3M|1|2 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-ray diffraction | 3 | 2014-10-22 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.0_03510.5 | NR_all_03510.4 | 2.91 | (14) 4U52|1|6, 4U4Q|1|2, 4U3U|1|2, 4U4U|1|6, 4U4R|1|6, 4V88|1|A2, 4U52|1|2, 4U3M|1|2, 4U4U|1|2, 4U4Q|1|6, 4V88|1|A6, 4U3U|1|6, 4U3M|1|6, 4U4R|1|2 | (0) | (39) 4U6F|1|6, 4U56|1|2, 4U3N|1|2, 4V8Y|1|B2, 4U4Y|1|6, 4U53|1|2, 3J6X|1|1S, 5FCJ|1|6, 5DC3|1|6, 4U51|1|6, 5I4L|1|6, 4U6F|1|2, 4U4N|1|2, 4U4Z|1|6, 5FCI|1|6, 5DC3|1|2, 4U55|1|2, 4V7R|1|A1, 4U4Z|1|2, 5FCI|1|2, 4U53|1|6, 3J6Y|1|1S, 4U4O|1|2, 4V6I|1|CA, 4U50|1|6, 4U4N|1|6, 4V7R|1|C1, 4U50|1|2, 5FCJ|1|2, 3J78|1|1S, 4U55|1|6, 4U4Y|1|2, 4U56|1|6, 4U4O|1|6, 4V8Z|1|B2, 5I4L|1|2, 4U51|1|2, 4U3N|1|6, 3J77|1|1S |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4U52|1|2 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 |
| 2 | 4U4Q|1|2 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 |
| 3 | 4U4U|1|2 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 |
| 4 | 4U3M|1|2 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1750 |
| 5 | 4U4R|1|2 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 1750 |
| 6 | 4U3U|1|2 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 1750 |
| 7 | 4V88|1|A2 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 1768 |
| 8 | 4U3M|1|6 | Crystal structure of Anisomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 |
| 9 | 4U4R|1|6 | Crystal structure of Lactimidomycin bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.8 | 1795 |
| 10 | 4U3U|1|6 | Crystal structure of Cycloheximide bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 2.9 | 1795 |
| 11 | 4V88|1|A6 | The structure of the eukaryotic ribosome at 3.0 A resolution. | X-RAY DIFFRACTION | 3 | 1770 |
| 12 | 4U4U|1|6 | Crystal structure of Lycorine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 |
| 13 | 4U4Q|1|6 | Crystal structure of Homoharringtonine bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 |
| 14 | 4U52|1|6 | Crystal structure of Nagilactone C bound to the yeast 80S ribosome | X-RAY DIFFRACTION | 3 | 1795 |