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Equivalence class NR_3.0_03510.52 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14V88|1|A6 (rep)Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction32014-07-09
25TBW|1|sRSmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-ray diffraction32017-07-26
34V88|1|A2Small subunit ribosomal RNA18S RIBOSOMAL RNASaccharomyces cerevisiaeEukaryaRF01960The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction32014-07-09
45TBW|1|ASmall subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-ray diffraction32017-07-26
57OSA|1|18SSmall subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-ray diffraction32021-12-08
67OSM|1|18SSmall subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-ray diffraction32021-12-08
77ZW0|1|2Small subunit ribosomal RNA18S ribosomal RNA (RDN18-1)Saccharomyces cerevisiae W303EukaryaRF01960FAP-80S Complex - Rotated stateElectron microscopy2.42022-10-05
87PZY|1|ASmall subunit ribosomal RNA18S ribosomal RNACandida albicans SC5314EukaryaRF01960Structure of the vacant Candida albicans 80S ribosomeElectron microscopy2.322022-05-18
97ZUX|1|218S ribosomal RNASaccharomyces cerevisiaeEukaryaCollided ribosome in a disome unit from S. cerevisiaeElectron microscopy2.52023-02-22
106T4Q|1|C2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.Electron microscopy2.62019-12-25
117Q08|1|ASmall subunit ribosomal RNA18S ribosomal RNACandida albicans SC5314EukaryaRF01960Structure of Candida albicans 80S ribosome in complex with cycloheximideElectron microscopy2.562022-05-25
127MPJ|1|B5Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Stm1 bound vacant 80S structure isolated from nop1-D243AElectron microscopy2.72022-05-11
137Q0F|1|ASmall subunit ribosomal RNA18S ribosomal RNACandida albicans SC5314EukaryaRF01960Structure of Candida albicans 80S ribosome in complex with phyllanthosideElectron microscopy2.642022-05-18
147Q0R|1|ASmall subunit ribosomal RNA18S ribosomal RNACandida albicans SC5314EukaryaRF01960Structure of the Candida albicans 80S ribosome in complex with blasticidin sElectron microscopy2.672022-05-25
154U4R|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.82014-10-22
166WOO|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPElectron microscopy2.92020-09-23
176TB3|1|2Small subunit ribosomal RNASaccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNASaccharomyces cerevisiaeEukaryaRF01960yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexElectron microscopy2.82020-04-22
186SNT|1|2Small subunit ribosomal RNASaccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNASaccharomyces cerevisiaeEukaryaRF01960Yeast 80S ribosome stalled on SDD1 mRNA.Electron microscopy2.82020-03-04
197Q0P|1|ASmall subunit ribosomal RNA18S ribosomal RNACandida albicans SC5314EukaryaRF01960Structure of the Candida albicans 80S ribosome in complex with anisomycinElectron microscopy2.772022-05-18
204U3U|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.92014-10-22
214U4R|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.82014-10-22
227A1G|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complexElectron microscopy32020-10-14
236ZVI|1|hSmall subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Mbf1-ribosome complexElectron microscopy32020-09-09
248CAH|1|218S ribosomal RNASaccharomyces cerevisiae W303Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complexElectron microscopy32023-05-24
254U3U|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.92014-10-22
264U3M|1|6Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
274U4Q|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
284U4U|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
294U52|1|6Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
304U3M|1|2Small subunit ribosomal RNA18S rRNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
314U52|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
324U4U|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
334U4Q|1|2Small subunit ribosomal RNA18S ribosomal RNASaccharomyces cerevisiaeEukaryaRF01960Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
348C01|1|218S rRNA precursorSaccharomyces cerevisiaeEukaryaEnp1TAP_A population of yeast small ribosomal subunit precursorsElectron microscopy2.72022-12-28
358C00|1|218S rRNA precursorSaccharomyces cerevisiaeEukaryaEnp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21Electron microscopy2.92022-12-28
368C83|1|218S ribosomal RNASaccharomyces cerevisiaeCryo-EM structure of in vitro reconstituted Otu2-bound Ub-40S complexElectron microscopy32023-05-24

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16ZVI|1|hMbf1-ribosome complexELECTRON MICROSCOPY31758
27ZUX|1|2Collided ribosome in a disome unit from S. cerevisiaeELECTRON MICROSCOPY2.51769
34V88|1|A6The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION31770
44U3U|1|6Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.91795
54U4R|1|6Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.81795
65TBW|1|sRCrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION31783
74U3M|1|6Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
84U4U|1|6Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
94U4Q|1|6Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
104U52|1|6Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION31795
117Q08|1|AStructure of Candida albicans 80S ribosome in complex with cycloheximideELECTRON MICROSCOPY2.561692
127Q0F|1|AStructure of Candida albicans 80S ribosome in complex with phyllanthosideELECTRON MICROSCOPY2.641692
137Q0R|1|AStructure of the Candida albicans 80S ribosome in complex with blasticidin sELECTRON MICROSCOPY2.671692
147Q0P|1|AStructure of the Candida albicans 80S ribosome in complex with anisomycinELECTRON MICROSCOPY2.771692
157PZY|1|AStructure of the vacant Candida albicans 80S ribosomeELECTRON MICROSCOPY2.321692
167OSM|1|18SIntermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-RAY DIFFRACTION31732
177A1G|1|2Structure of a crosslinked yeast ABCE1-bound 43S pre-initiation complexELECTRON MICROSCOPY31771
188CAH|1|2Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complexELECTRON MICROSCOPY31745
195TBW|1|ACrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION31781
204U3M|1|2Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
214U4R|1|2Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.81750
224U3U|1|2Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.91750
234V88|1|A2The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION31768
244U4U|1|2Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
254U4Q|1|2Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
264U52|1|2Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION31750
277MPJ|1|B5Stm1 bound vacant 80S structure isolated from nop1-D243AELECTRON MICROSCOPY2.71744
287OSA|1|18SPre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-RAY DIFFRACTION31717
296WOO|1|2CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPELECTRON MICROSCOPY2.91780
307ZW0|1|2FAP-80S Complex - Rotated stateELECTRON MICROSCOPY2.41765
316TB3|1|2yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexELECTRON MICROSCOPY2.81771
326SNT|1|2Yeast 80S ribosome stalled on SDD1 mRNA.ELECTRON MICROSCOPY2.81771
336T4Q|1|C2Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.ELECTRON MICROSCOPY2.61771
348C83|1|2Cryo-EM structure of in vitro reconstituted Otu2-bound Ub-40S complexELECTRON MICROSCOPY31177
358C01|1|2Enp1TAP_A population of yeast small ribosomal subunit precursorsELECTRON MICROSCOPY2.71545
368C00|1|2Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21ELECTRON MICROSCOPY2.91425
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