Equivalence class NR_3.0_06650.22 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7O7Y|1|B5+ 7O7Y|1|B8 (rep) | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution) | Electron microscopy | 2.2 | 2021-06-02 |
| 2 | 7O7Z|1|B5+ 7O7Z|1|B8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot) | Electron microscopy | 2.4 | 2021-06-02 |
| 3 | 7O80|1|B5+ 7O80|1|B8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site | Electron microscopy | 2.9 | 2021-06-02 |
| 4 | 7OBR|1|5+ 7OBR|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | RNC-SRP early complex | Electron microscopy | 2.8 | 2021-07-21 |
| 5 | 6SGC|1|54+ 6SGC|1|84 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Rabbit 80S ribosome stalled on a poly(A) tail | Electron microscopy | 2.8 | 2019-12-04 |
| 6 | 7QWQ|1|5+ 7QWQ|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Ternary complex of ribosome nascent chain with SRP and NAC | Electron microscopy | 2.83 | 2022-03-16 |
| 7 | 7QWR|1|5+ 7QWR|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC | Electron microscopy | 2.9 | 2022-03-09 |
| 8 | 6R5Q|1|5+ 6R5Q|1|8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Structure of XBP1u-paused ribosome nascent chain complex (post-state) | Electron microscopy | 3 | 2019-07-10 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.0_06650.22 | NR_3.0_06650.21 | 3.222 | (7) 7O80|1|B5+7O80|1|B8, 7O7Z|1|B5+7O7Z|1|B8, 7O7Y|1|B5+7O7Y|1|B8, 6SGC|1|54+6SGC|1|84, 6R5Q|1|5+6R5Q|1|8, 7QWR|1|5+7QWR|1|8, 7OBR|1|5+7OBR|1|8 | (1) 7QWQ|1|5+7QWQ|1|8 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_3.0_06650.22 | NR_3.0_06650.23 | 3.232 | (8) 6SGC|1|54+6SGC|1|84, 6R5Q|1|5+6R5Q|1|8, 7QWR|1|5+7QWR|1|8, 7QWQ|1|5+7QWQ|1|8, 7OBR|1|5+7OBR|1|8, 7O80|1|B5+7O80|1|B8, 7O7Z|1|B5+7O7Z|1|B8, 7O7Y|1|B5+7O7Y|1|B8 | (0) | (1) 7TOR|1|A28S+7TOR|1|A58S |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 7QWR|1|5+7QWR|1|8 | Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC | ELECTRON MICROSCOPY | 2.9 | 3493 |
| 2 | 7QWQ|1|5+7QWQ|1|8 | Ternary complex of ribosome nascent chain with SRP and NAC | ELECTRON MICROSCOPY | 2.83 | 3493 |
| 3 | 7OBR|1|5+7OBR|1|8 | RNC-SRP early complex | ELECTRON MICROSCOPY | 2.8 | 3493 |
| 4 | 7O7Z|1|B5+7O7Z|1|B8 | Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot) | ELECTRON MICROSCOPY | 2.4 | 3640 |
| 5 | 7O7Y|1|B5+7O7Y|1|B8 | Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution) | ELECTRON MICROSCOPY | 2.2 | 3640 |
| 6 | 7O80|1|B5+7O80|1|B8 | Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site | ELECTRON MICROSCOPY | 2.9 | 3640 |
| 7 | 6R5Q|1|5+6R5Q|1|8 | Structure of XBP1u-paused ribosome nascent chain complex (post-state) | ELECTRON MICROSCOPY | 3 | 3543 |
| 8 | 6SGC|1|54+6SGC|1|84 | Rabbit 80S ribosome stalled on a poly(A) tail | ELECTRON MICROSCOPY | 2.8 | 3603 |