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Equivalence class NR_3.0_10157.18 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14U26|1|BB (rep)5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-ray diffraction2.82014-07-30
25AFI|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF000012.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMElectron microscopy2.92015-03-11
34U20|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to flopristin.X-ray diffraction2.92014-07-30
44U27|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to flopristin and linopristin.X-ray diffraction2.82014-07-30
54U24|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to dalfopristin.X-ray diffraction2.92014-07-30
65J7L|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-ray diffraction32016-07-27
74YBB|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.12015-03-18
84U1U|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to quinupristin.X-ray diffraction2.952014-07-30
94U25|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to virginiamycin M1.X-ray diffraction2.92014-07-30
104U1V|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to linopristin.X-ray diffraction32014-07-30
114U1U|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to quinupristin.X-ray diffraction2.952014-07-30
125J5B|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the WT E coli ribosome bound to tetracyclineX-ray diffraction2.82016-07-27
135J91|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the Wild-type 70S E coli ribosome bound to TigecyclineX-ray diffraction2.962016-07-06
145IQR|1|35S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of RelA bound to the 70S ribosomeElectron microscopy32016-05-04
155J7L|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-ray diffraction32016-07-27
164U20|1|BB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to flopristin.X-ray diffraction2.92014-07-30
174V9D|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction32014-07-09
185J91|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the Wild-type 70S E coli ribosome bound to TigecyclineX-ray diffraction2.962016-07-06
194V9P|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
204YBB|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.12015-03-18
215J5B|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the WT E coli ribosome bound to tetracyclineX-ray diffraction2.82016-07-27
224U27|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to flopristin and linopristin.X-ray diffraction2.82014-07-30
234U25|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to virginiamycin M1.X-ray diffraction2.92014-07-30
244V9D|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction32014-07-09
254WOI|1|BB5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF000014,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-ray diffraction32015-08-05
264V9O|1|AB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
274WOI|1|CB5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF000014,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-ray diffraction32015-08-05
284U24|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to dalfopristin.X-ray diffraction2.92014-07-30
294U1V|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to linopristin.X-ray diffraction32014-07-30
304V9O|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
314U26|1|DB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-ray diffraction2.82014-07-30
324V9P|1|AB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
334V9P|1|EB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
344V9O|1|EB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
354V9O|1|GB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09
364V9P|1|GB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Control of ribosomal subunit rotation by elongation factor GX-ray diffraction2.92014-07-09

Release history

Release2.892.902.912.922.932.94
Date2016-08-192016-08-262016-09-022016-09-092016-09-162016-09-23

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.0_10157.18NR_all_10157.172.89(36) 4V9O|1|AB, 5J5B|1|DB, 4U24|1|DB, 4V9P|1|GB, 4V9D|1|DB, 4V9P|1|EB, 4V9O|1|CB, 5J7L|1|DB, 4U25|1|DB, 4WOI|1|CB, 5J7L|1|CB, 4U1U|1|DB, 4U25|1|BB, 4WOI|1|BB, 4U1U|1|BB, 5J91|1|DB, 4U26|1|DB, 4YBB|1|DB, 4V9O|1|EB, 5J91|1|CB, 4U1V|1|DB, 4U26|1|BB, 4YBB|1|CB, 4U1V|1|BB, 5AFI|1|B, 4U20|1|BB, 4V9P|1|AB, 4U27|1|BB, 4V9O|1|GB, 5J5B|1|CB, 4U24|1|BB, 4U27|1|DB, 5IQR|1|3, 4U20|1|DB, 4V9P|1|CB, 4V9D|1|CB(0) (118) 4V4H|1|BA, 5J88|1|DB, 5GAF|1|B, 4V77|1|BB, 4V5H|1|BA, 3JCJ|1|0, 3J9Z|1|LB, 4WWW|1|RB, 4V71|1|BB, 4V56|1|BA, 4V85|1|BB, 4V6S|1|AA, 4V6M|1|B7, 2RDO|1|A, 4V53|1|BA, 5JC9|1|DB, 4V4V|1|B9, 4V7T|1|BB, 5IT8|1|DB, 4V7B|1|BB, 4V64|1|DA, 4V6D|1|BB, 4V75|1|BB, 3JCD|1|B, 4V5B|1|AA, 4WF1|1|BB, 4V6Q|1|BA, 4V6Z|1|BB, 3J8G|1|A, 4V7V|1|BB, 4V52|1|BA, 4V6K|1|AA, 5J8A|1|DB, 4V79|1|BB, 4V4Q|1|BA, 4V5Y|1|DA, 5GAH|1|B, 3JBU|1|a, 4V73|1|BB, 4V9C|1|BB, 4V57|1|BA, 4V6V|1|Ba, 3J5L|1|B, 4V6O|1|BA, 4V50|1|BA, 4V54|1|BA, 4V7U|1|BB, 4V6E|1|BB, 5JU8|1|BB, 4V7D|1|AB, 4V66|1|BA, 4WWW|1|YB, 4V72|1|BB, 4V6T|1|BB, 4V56|1|DA, 3BBX|1|A, 4V89|1|BB, 4V53|1|DA, 4V7T|1|DB, 4V6N|1|AA, 4V6D|1|DB, 5JTE|1|BB, 4V4W|1|B9, 5J88|1|CB, 4V48|1|A9, 4V7C|1|BB, 5GAE|1|B, 4V76|1|BB, 4V65|1|BA, 4V70|1|BB, 4V5B|1|CA, 3J9Y|1|B, 3JCE|1|B, 4V55|1|DA, 4V7V|1|DB, 4V6R|1|BA, 2J28|1|A, 4V6L|1|BA, 4V7S|1|DB, 4V4Q|1|DA, 4V52|1|DA, 4V6C|1|DB, 5IT8|1|CB, 4UY8|1|B, 4V74|1|BB, 4V57|1|DA, 5AKA|1|A, 3J7Z|1|B, 4V6Y|1|BB, 4V7U|1|DB, 4V54|1|DA, 5L3P|1|B, 4V6E|1|DB, 4V4H|1|DA, 4V50|1|

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.0_10157.18NR_3.0_10157.192.95(36) 4U1U|1|BB, 4V9O|1|GB, 4V9P|1|AB, 4V9P|1|CB, 4V9P|1|EB, 4V9P|1|GB, 4WOI|1|BB, 4WOI|1|CB, 4YBB|1|CB, 4YBB|1|DB, 5AFI|1|B, 5IQR|1|3, 5J5B|1|CB, 5J5B|1|DB, 5J7L|1|CB, 5J7L|1|DB, 5J91|1|CB, 4V9O|1|EB, 4V9O|1|CB, 4U1U|1|DB, 4U1V|1|BB, 4U1V|1|DB, 4U20|1|BB, 4U20|1|DB, 4U24|1|BB, 4U24|1|DB, 4U25|1|BB, 4U25|1|DB, 4U26|1|BB, 4U26|1|DB, 4U27|1|BB, 4U27|1|DB, 4V9D|1|CB, 4V9D|1|DB, 4V9O|1|AB, 5J91|1|DB(0) (0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
15AFI|1|B2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.9120
25IQR|1|3Structure of RelA bound to the 70S ribosomeELECTRON MICROSCOPY3118
34U26|1|DBCrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.8118
44U24|1|DBCrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.9118
54U25|1|DBCrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.9118
64U27|1|DBCrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.8118
74U1V|1|DBCrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION3118
84U20|1|DBCrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.9118
94U1U|1|DBCrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.95118
104V9D|1|DBStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION3118
114V9P|1|EBControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
124V9O|1|EBControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
134YBB|1|CBHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.1118
145J91|1|CBStructure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.96118
155J5B|1|CBStructure of the WT E coli ribosome bound to tetracyclineX-RAY DIFFRACTION2.8118
165J7L|1|CBStructure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-RAY DIFFRACTION3118
175J7L|1|DBStructure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-RAY DIFFRACTION3120
185J5B|1|DBStructure of the WT E coli ribosome bound to tetracyclineX-RAY DIFFRACTION2.8120
195J91|1|DBStructure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.96120
204YBB|1|DBHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.1120
214U26|1|BBCrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.8119
224U24|1|BBCrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.9119
234U25|1|BBCrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.9119
244U27|1|BBCrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.8119
254U1V|1|BBCrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION3119
264U20|1|BBCrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.9119
274U1U|1|BBCrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.95119
284V9D|1|CBStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION3119
294WOI|1|BB4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION3119
304V9O|1|ABControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
314V9O|1|CBControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
324V9P|1|CBControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
334V9P|1|ABControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
344WOI|1|CB4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION3118
354V9P|1|GBControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
364V9O|1|GBControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
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