#IFECompound(s)RNA source organismTitleMethodResolutionDate
15J7L|1|DB (rep)5S rRNAEscherichia coliStructure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-RAY DIFFRACTION32016-07-27
24YBB|1|DB5S rRNAEscherichia coliHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.12015-03-18
36I7V|1|DB5S ribosomal RNAEscherichia coliRibosomal protein paralogs bL31 and bL36X-RAY DIFFRACTION2.92018-12-05
44WOI|1|BB5S ribosomal RNAEscherichia coli4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION32015-08-05
55J91|1|DB5S rRNAEscherichia coliStructure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.962016-07-06
64U27|1|BB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.82014-07-30
74WOI|1|CB5S ribosomal RNAEscherichia coli4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION32015-08-05
84V9D|1|CB5S rRNAEscherichia coliStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION32014-07-09
94V9P|1|CB5S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
104V9P|1|EB5S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
114U24|1|BB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.92014-07-30
124V9O|1|AB5S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
134U26|1|BB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.82014-07-30
144V9P|1|GB5S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
154V9O|1|CB5S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
164U25|1|BB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.92014-07-30
174V9O|1|EB5S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
184V9P|1|AB5S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
194U1U|1|BB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.952014-07-30
204U20|1|BB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.92014-07-30
214U1V|1|BB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION32014-07-30
225J7L|1|CB5S rRNAEscherichia coliStructure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-RAY DIFFRACTION32016-07-27
234V9D|1|DB5S rRNAEscherichia coliStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION32014-07-09
246I7V|1|CB5S ribosomal RNAEscherichia coliRibosomal protein paralogs bL31 and bL36X-RAY DIFFRACTION2.92018-12-05
254V9O|1|GB5S rRNAEscherichia coliControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.92014-07-09
264U27|1|DB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.82014-07-30
274U25|1|DB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.92014-07-30
284U1V|1|DB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION32014-07-30
294YBB|1|CB5S rRNAEscherichia coliHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.12015-03-18
304U26|1|DB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.82014-07-30
314U1U|1|DB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.952014-07-30
324U20|1|DB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.92014-07-30
334U24|1|DB5S rRNAEscherichia coliCrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.92014-07-30
345J91|1|CB5S rRNAEscherichia coliStructure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.962016-07-06
355J5B|1|DB5S rRNAEscherichia coliStructure of the WT E coli ribosome bound to tetracyclineX-RAY DIFFRACTION2.82016-07-27
365J5B|1|CB5S rRNAEscherichia coliStructure of the WT E coli ribosome bound to tetracyclineX-RAY DIFFRACTION2.82016-07-27
377K00|1|b5S rRNAEscherichia coliStructure of the Bacterial Ribosome at 2 Angstrom ResolutionELECTRON MICROSCOPY1.982020-09-23
386XZ7|1|B5S rRNAEscherichia coliE. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).ELECTRON MICROSCOPY2.12020-07-22
396PJ6|1|J5S rRNAEscherichia coliHigh resolution cryo-EM structure of E.coli 50SELECTRON MICROSCOPY2.22020-01-22
407BL4|1|B5S ribosomal RNAin vitro reconstituted 50S-ObgE-GMPPNP-RsfS particleELECTRON MICROSCOPY2.42021-05-12
416XZB|1|B25S rRNAE. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).ELECTRON MICROSCOPY2.542020-11-04
426YSS|1|B5S ribosomal RNAEscherichia coliStructure of the P+9 ArfB-ribosome complex in the post-hydrolysis stateELECTRON MICROSCOPY2.62020-08-19
436PC6|1|J5S ribosomal RNAEscherichia coliE. coli 50S ribosome bound to compound 47ELECTRON MICROSCOPY2.52020-06-17
446PCR|1|J5S ribosomal RNAEscherichia coliE. coli 50S ribosome bound to compound 40oELECTRON MICROSCOPY2.52020-06-17
456PC7|1|J5S ribosomal RNAEscherichia coliE. coli 50S ribosome bound to compound 46ELECTRON MICROSCOPY2.52020-06-17
466YS3|1|a5S rRNAEscherichia coliCryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptideELECTRON MICROSCOPY2.582020-09-30
476TBV|1|05S15S rRNAEscherichia coliCryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)ELECTRON MICROSCOPY2.72020-01-01
486TC3|1|05S15S rRNAEscherichia coliCryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)ELECTRON MICROSCOPY2.72020-01-01
496XZA|1|B25S rRNAE. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).ELECTRON MICROSCOPY2.662020-11-04
506PCQ|1|J5S ribosomal RNAEscherichia coliE. coli 50S ribosome bound to VM2ELECTRON MICROSCOPY2.62020-06-17
516PC5|1|J5S ribosomal RNAEscherichia coliE. coli 50S ribosome bound to compounds 46 and VS1ELECTRON MICROSCOPY2.72020-06-17
526QDW|1|a5S rRNAEscherichia coliCryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptideELECTRON MICROSCOPY2.832020-01-15
535AFI|1|B5S ribosomal RNAEscherichia coli2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.92015-03-11
547B5K|1|B5S rRNAE. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.ELECTRON MICROSCOPY2.92021-05-26
556Y69|1|B5S ribosomal RNAEscherichia coliCryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinXELECTRON MICROSCOPY2.862020-07-01
566ORE|1|35S ribosomal RNAEscherichia coliRelease complex 70SELECTRON MICROSCOPY2.92019-06-19
576PCT|1|J5S ribosomal RNAEscherichia coliE. coli 50S ribosome bound to compound 41qELECTRON MICROSCOPY2.82020-06-17
586WYV|1|J5S ribosomal RNAEscherichia coliE. coli 50S ribosome bound to compounds 47 and VS1ELECTRON MICROSCOPY2.752020-06-17
596U48|1|CB5S rRNAEscherichia coliE. coli 50S with phazolicin (PHZ) bound in exit tunnelELECTRON MICROSCOPY2.872019-09-18
605NWY|1|O5S rRNAEscherichia coli2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complexELECTRON MICROSCOPY2.92017-07-19
615MDV|1|35S ribosomal RNAEscherichia coliStructure of ArfA and RF2 bound to the 70S ribosome (accommodated state)ELECTRON MICROSCOPY2.972016-12-14
626ZTO|1|BB5S ribosomal RNAEscherichia coliE. coli 70S-RNAP expressome complex in uncoupled state 1ELECTRON MICROSCOPY32020-09-23
636ZTP|1|BB5S ribosomal RNAEscherichia coliE. coli 70S-RNAP expressome complex in uncoupled state 6ELECTRON MICROSCOPY32020-09-16
646ZU1|1|BB5S ribosomal RNAEscherichia coliE. coli 70S-RNAP expressome complex in uncoupled state 2ELECTRON MICROSCOPY32020-09-16
656WDE|1|25S ribosomal RNAEscherichia coliCryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B)ELECTRON MICROSCOPY32020-07-01
666PCS|1|J5S ribosomal RNAEscherichia coliE. coli 50S ribosome bound to compound 40eELECTRON MICROSCOPY2.82020-06-17
676WD0|1|25S ribosomal RNAEscherichia coliCryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-A)ELECTRON MICROSCOPY32020-07-01
686HRM|1|35S ribosomal RNAEscherichia coliE. coli 70S d2d8 stapled ribosomeELECTRON MICROSCOPY2.962018-12-19
696PC8|1|J5S ribosomal RNAEscherichia coliE. coli 50S ribosome bound to compound 40qELECTRON MICROSCOPY2.92020-06-17
706H4N|1|B5S ribosomal RNAEscherichia coliStructure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli RibosomeELECTRON MICROSCOPY32018-09-05
716QUL|1|B5S rRNAEscherichia coliStructure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolidELECTRON MICROSCOPY32019-04-10
726PCH|1|J5S ribosomal RNAEscherichia coliE. coli 50S ribosome bound to compound 21ELECTRON MICROSCOPY2.92020-06-17
735WFS|1|B5S rRNAEscherichia coli70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)ELECTRON MICROSCOPY32018-05-02
745WDT|1|B5S rRNAEscherichia coli70S ribosome-EF-Tu H84A complex with GppNHpELECTRON MICROSCOPY32018-04-25
755IQR|1|35S rRNAEscherichia coliStructure of RelA bound to the 70S ribosomeELECTRON MICROSCOPY32016-05-04

Release history

Release3.1803.1813.1823.1833.1843.1853.186
Date2021-05-262021-06-022021-06-092021-06-162021-06-232021-06-302021-07-07

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14V9O|1|GBControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
24V9P|1|GBControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
34WOI|1|CB4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION3118
46I7V|1|CBRibosomal protein paralogs bL31 and bL36X-RAY DIFFRACTION2.9118
54U26|1|DBCrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.8118
64U24|1|DBCrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.9118
74U25|1|DBCrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.9118
84U27|1|DBCrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.8118
94U1V|1|DBCrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION3118
104U20|1|DBCrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.9118
114U1U|1|DBCrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.95118
124V9D|1|DBStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION3118
135IQR|1|3Structure of RelA bound to the 70S ribosomeELECTRON MICROSCOPY3118
146PJ6|1|JHigh resolution cryo-EM structure of E.coli 50SELECTRON MICROSCOPY2.2118
156ORE|1|3Release complex 70SELECTRON MICROSCOPY2.9120
165NWY|1|O2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complexELECTRON MICROSCOPY2.9118
175MDV|1|3Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)ELECTRON MICROSCOPY2.97120
184V9O|1|EBControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
194V9P|1|EBControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
204YBB|1|CBHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.1118
215J7L|1|CBStructure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-RAY DIFFRACTION3118
225J5B|1|CBStructure of the WT E coli ribosome bound to tetracyclineX-RAY DIFFRACTION2.8118
235J91|1|CBStructure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.96118
246I7V|1|DBRibosomal protein paralogs bL31 and bL36X-RAY DIFFRACTION2.9119
255J7L|1|DBStructure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracyclineX-RAY DIFFRACTION3120
265J5B|1|DBStructure of the WT E coli ribosome bound to tetracyclineX-RAY DIFFRACTION2.8120
275J91|1|DBStructure of the Wild-type 70S E coli ribosome bound to TigecyclineX-RAY DIFFRACTION2.96120
284YBB|1|DBHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.1120
294U26|1|BBCrystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.X-RAY DIFFRACTION2.8119
304U24|1|BBCrystal structure of the E. coli ribosome bound to dalfopristin.X-RAY DIFFRACTION2.9119
314U25|1|BBCrystal structure of the E. coli ribosome bound to virginiamycin M1.X-RAY DIFFRACTION2.9119
324U27|1|BBCrystal structure of the E. coli ribosome bound to flopristin and linopristin.X-RAY DIFFRACTION2.8119
334U1V|1|BBCrystal structure of the E. coli ribosome bound to linopristin.X-RAY DIFFRACTION3119
344U20|1|BBCrystal structure of the E. coli ribosome bound to flopristin.X-RAY DIFFRACTION2.9119
354U1U|1|BBCrystal structure of the E. coli ribosome bound to quinupristin.X-RAY DIFFRACTION2.95119
364V9D|1|CBStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION3119
374WOI|1|BB4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION3119
384V9O|1|ABControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
394V9O|1|CBControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
404V9P|1|CBControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
414V9P|1|ABControl of ribosomal subunit rotation by elongation factor GX-RAY DIFFRACTION2.9118
426PC8|1|JE. coli 50S ribosome bound to compound 40qELECTRON MICROSCOPY2.9118
436PC5|1|JE. coli 50S ribosome bound to compounds 46 and VS1ELECTRON MICROSCOPY2.7118
446PCR|1|JE. coli 50S ribosome bound to compound 40oELECTRON MICROSCOPY2.5118
456PC6|1|JE. coli 50S ribosome bound to compound 47ELECTRON MICROSCOPY2.5118
466PCS|1|JE. coli 50S ribosome bound to compound 40eELECTRON MICROSCOPY2.8118
476PCQ|1|JE. coli 50S ribosome bound to VM2ELECTRON MICROSCOPY2.6118
486PC7|1|JE. coli 50S ribosome bound to compound 46ELECTRON MICROSCOPY2.5118
496PCT|1|JE. coli 50S ribosome bound to compound 41qELECTRON MICROSCOPY2.8118
506PCH|1|JE. coli 50S ribosome bound to compound 21ELECTRON MICROSCOPY2.9118
516WYV|1|JE. coli 50S ribosome bound to compounds 47 and VS1ELECTRON MICROSCOPY2.75118
527BL4|1|Bin vitro reconstituted 50S-ObgE-GMPPNP-RsfS particleELECTRON MICROSCOPY2.4119
536U48|1|CBE. coli 50S with phazolicin (PHZ) bound in exit tunnelELECTRON MICROSCOPY2.87118
546Y69|1|BCryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinXELECTRON MICROSCOPY2.86120
556H4N|1|BStructure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli RibosomeELECTRON MICROSCOPY3120
567K00|1|bStructure of the Bacterial Ribosome at 2 Angstrom ResolutionELECTRON MICROSCOPY1.98119
576QUL|1|BStructure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolidELECTRON MICROSCOPY3120
586ZU1|1|BBE. coli 70S-RNAP expressome complex in uncoupled state 2ELECTRON MICROSCOPY3120
596ZTP|1|BBE. coli 70S-RNAP expressome complex in uncoupled state 6ELECTRON MICROSCOPY3120
606ZTO|1|BBE. coli 70S-RNAP expressome complex in uncoupled state 1ELECTRON MICROSCOPY3120
616XZ7|1|BE. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).ELECTRON MICROSCOPY2.1120
626XZB|1|B2E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).ELECTRON MICROSCOPY2.54120
636XZA|1|B2E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).ELECTRON MICROSCOPY2.66120
646TBV|1|05S1Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)ELECTRON MICROSCOPY2.7120
656TC3|1|05S1Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)ELECTRON MICROSCOPY2.7120
667B5K|1|BE. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.ELECTRON MICROSCOPY2.9120
676HRM|1|3E. coli 70S d2d8 stapled ribosomeELECTRON MICROSCOPY2.96120
686WD0|1|2Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-A)ELECTRON MICROSCOPY3120
696WDE|1|2Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B)ELECTRON MICROSCOPY3120
705AFI|1|B2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.9120
715WFS|1|B70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)ELECTRON MICROSCOPY3120
725WDT|1|B70S ribosome-EF-Tu H84A complex with GppNHpELECTRON MICROSCOPY3120
736YSS|1|BStructure of the P+9 ArfB-ribosome complex in the post-hydrolysis stateELECTRON MICROSCOPY2.6120
746YS3|1|aCryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptideELECTRON MICROSCOPY2.58118
756QDW|1|aCryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptideELECTRON MICROSCOPY2.83118