NR_3.0_10157.88

Members (98)
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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	5J7L\|1\|DB (rep)	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-ray diffraction	3	2016-07-27
2	4YBB\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2015-03-18
3	6I7V\|1\|DB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Ribosomal protein paralogs bL31 and bL36	X-ray diffraction	2.9	2018-12-05
4	4WOI\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-ray diffraction	3	2015-08-05
5	5J91\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-ray diffraction	2.96	2016-07-06
6	4U27\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-ray diffraction	2.8	2014-07-30
7	4WOI\|1\|CB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-ray diffraction	3	2015-08-05
8	4V9D\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-ray diffraction	3	2014-07-09
9	4V9P\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
10	4V9P\|1\|EB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
11	4U24\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-ray diffraction	2.9	2014-07-30
12	4V9O\|1\|AB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
13	4U26\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-ray diffraction	2.8	2014-07-30
14	4V9P\|1\|GB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
15	4V9O\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
16	4U25\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-ray diffraction	2.9	2014-07-30
17	4V9O\|1\|EB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
18	4V9P\|1\|AB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
19	4U1U\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to quinupristin.	X-ray diffraction	2.95	2014-07-30
20	4U20\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to flopristin.	X-ray diffraction	2.9	2014-07-30
21	4U1V\|1\|BB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to linopristin.	X-ray diffraction	3	2014-07-30
22	5J7L\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-ray diffraction	3	2016-07-27
23	4V9D\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-ray diffraction	3	2014-07-09
24	6I7V\|1\|CB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Ribosomal protein paralogs bL31 and bL36	X-ray diffraction	2.9	2018-12-05
25	4V9O\|1\|GB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Control of ribosomal subunit rotation by elongation factor G	X-ray diffraction	2.9	2014-07-09
26	4U27\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-ray diffraction	2.8	2014-07-30
27	4U25\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-ray diffraction	2.9	2014-07-30
28	4U1V\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to linopristin.	X-ray diffraction	3	2014-07-30
29	4YBB\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	High-resolution structure of the Escherichia coli ribosome	X-ray diffraction	2.1	2015-03-18
30	4U26\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-ray diffraction	2.8	2014-07-30
31	4U1U\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to quinupristin.	X-ray diffraction	2.95	2014-07-30
32	4U20\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to flopristin.	X-ray diffraction	2.9	2014-07-30
33	4U24\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-ray diffraction	2.9	2014-07-30
34	5J91\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-ray diffraction	2.96	2016-07-06
35	5J5B\|1\|DB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the WT E coli ribosome bound to tetracycline	X-ray diffraction	2.8	2016-07-27
36	5J5B\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the WT E coli ribosome bound to tetracycline	X-ray diffraction	2.8	2016-07-27
37	7K00\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of the Bacterial Ribosome at 2 Angstrom Resolution	Electron microscopy	1.98	2020-09-23
38	6XZ7\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).	Electron microscopy	2.1	2020-07-22
39	7LVK\|1\|J	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Cfr-modified 50S subunit from Escherichia coli	Electron microscopy	2.2	2021-12-15
40	6PJ6\|1\|J	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	High resolution cryo-EM structure of E.coli 50S	Electron microscopy	2.2	2020-01-22
41	7N1P\|1\|5	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation	Electron microscopy	2.33	2021-07-14
42	7PJS\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)	Electron microscopy	2.35	2021-10-20
43	7O1A\|1\|BB	5S ribosomal RNA	Ribosomal RNA 5S	Escherichia coli K-12	Bacteria	RF00001	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan	Electron microscopy	2.4	2021-09-01
44	7S1H\|1\|J	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Wild-type Escherichia coli ribosome with antibiotic linezolid	Electron microscopy	2.35	2021-11-17
45	7S1K\|1\|J	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid	Electron microscopy	2.42	2022-01-19
46	7BL4\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli K-12	Bacteria	RF00001	in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle	Electron microscopy	2.4	2021-05-12
47	7N2U\|1\|5	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	Elongating 70S ribosome complex in a hybrid-H1 pre-translocation (PRE-H1) conformation	Electron microscopy	2.53	2021-07-14
48	7N2V\|1\|5	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)	Electron microscopy	2.54	2021-07-14
49	7S1G\|1\|J	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	wild-type Escherichia coli stalled ribosome with antibiotic linezolid	Electron microscopy	2.48	2021-11-17
50	6XZB\|1\|B2	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).	Electron microscopy	2.54	2020-11-04
51	6YSS\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state	Electron microscopy	2.6	2020-08-19
52	6PC6\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to compound 47	Electron microscopy	2.5	2020-06-17
53	6PCR\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to compound 40o	Electron microscopy	2.5	2020-06-17
54	6PC7\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to compound 46	Electron microscopy	2.5	2020-06-17
55	6YS3\|1\|a	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide	Electron microscopy	2.58	2020-09-30
56	7O1C\|1\|BB	5S ribosomal RNA	Ribosomal RNA 5S	Escherichia coli K-12	Bacteria	RF00001	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophan	Electron microscopy	2.6	2021-09-01
57	7N30\|1\|5	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	Elongating 70S ribosome complex in a hybrid-H2* pre-translocation (PRE-H2*) conformation	Electron microscopy	2.66	2021-07-14
58	7NWT\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)	Electron microscopy	2.66	2021-12-15
59	7N31\|1\|5	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	Elongating 70S ribosome complex in a post-translocation (POST) conformation	Electron microscopy	2.69	2021-07-14
60	6TBV\|1\|05S1	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)	Electron microscopy	2.7	2020-01-01
61	6TC3\|1\|05S1	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)	Electron microscopy	2.7	2020-01-01
62	6XZA\|1\|B2	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).	Electron microscopy	2.66	2020-11-04
63	7N2C\|1\|5	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)	Electron microscopy	2.72	2021-07-14
64	6PCQ\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to VM2	Electron microscopy	2.6	2020-06-17
65	6PC5\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to compounds 46 and VS1	Electron microscopy	2.7	2020-06-17
66	6QDW\|1\|a	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide	Electron microscopy	2.83	2020-01-15
67	7NSO\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNA	Electron microscopy	2.9	2021-07-14
68	7ST2\|1\|2	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII)	Electron microscopy	2.9	2022-02-23
69	5AFI\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	Electron microscopy	2.9	2015-03-11
70	7OT5\|1\|3	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	CspA-70 cotranslational folding intermediate 1	Electron microscopy	2.9	2022-01-19
71	7B5K\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.	Electron microscopy	2.9	2021-05-26
72	6Y69\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX	Electron microscopy	2.86	2020-07-01
73	7O19\|1\|BB	5S ribosomal RNA	Ribosomal RNA 5S	Escherichia coli K-12	Bacteria	RF00001	Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophan	Electron microscopy	2.9	2021-09-01
74	6ORE\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Release complex 70S	Electron microscopy	2.9	2019-06-19
75	7OIZ\|1\|b	Small subunit ribosomal RNA fragment	16S rRNA	Escherichia coli K-12	Bacteria	RF00001	Cryo-EM structure of 70S ribosome stalled with TnaC peptide	Electron microscopy	2.9	2021-09-15
76	7P3K\|1\|b	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	Cryo-EM structure of 70S ribosome stalled with TnaC peptide (control)	Electron microscopy	2.9	2021-10-27
77	6PCT\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to compound 41q	Electron microscopy	2.8	2020-06-17
78	6WYV\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to compounds 47 and VS1	Electron microscopy	2.75	2020-06-17
79	6U48\|1\|CB	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	E. coli 50S with phazolicin (PHZ) bound in exit tunnel	Electron microscopy	2.87	2019-09-18
80	5NWY\|1\|O	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex	Electron microscopy	2.9	2017-07-19
81	5MDV\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)	Electron microscopy	2.97	2016-12-14
82	6ZTP\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 70S-RNAP expressome complex in uncoupled state 6	Electron microscopy	3	2020-09-16
83	6ZU1\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 70S-RNAP expressome complex in uncoupled state 2	Electron microscopy	3	2020-09-16
84	6ZTO\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 70S-RNAP expressome complex in uncoupled state 1	Electron microscopy	3	2020-09-23
85	7OII\|1\|3	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	CspA-70 cotranslational folding intermediate 2	Electron microscopy	3	2022-01-19
86	7OIF\|1\|3	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	CspA-27 cotranslational folding intermediate 2	Electron microscopy	3	2022-01-19
87	7ST6\|1\|2	5S ribosomal RNA	5S rRNA	Escherichia coli K-12	Bacteria	RF00001	Pre translocation, non-rotated 70S ribosome (Structure I)	Electron microscopy	3	2022-02-23
88	6WDE\|1\|2	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B)	Electron microscopy	3	2020-07-01
89	6PCS\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to compound 40e	Electron microscopy	2.8	2020-06-17
90	6WD0\|1\|2	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-A)	Electron microscopy	3	2020-07-01
91	6HRM\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 70S d2d8 stapled ribosome	Electron microscopy	2.96	2018-12-19
92	6PC8\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to compound 40q	Electron microscopy	2.9	2020-06-17
93	6H4N\|1\|B	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome	Electron microscopy	3	2018-09-05
94	6QUL\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid	Electron microscopy	3	2019-04-10
95	6PCH\|1\|J	5S ribosomal RNA	5S ribosomal RNA	Escherichia coli	Bacteria	RF00001	E. coli 50S ribosome bound to compound 21	Electron microscopy	2.9	2020-06-17
96	5WFS\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)	Electron microscopy	3	2018-05-02
97	5WDT\|1\|B	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	70S ribosome-EF-Tu H84A complex with GppNHp	Electron microscopy	3	2018-04-25
98	5IQR\|1\|3	5S ribosomal RNA	5S rRNA	Escherichia coli	Bacteria	RF00001	Structure of RelA bound to the 70S ribosome	Electron microscopy	3	2016-05-04

Release history

Release	3.219
Date	2022-02-23

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_3.0_10157.88	NR_3.0_10157.87	3.219	(96) 6I7V\|1\|CB, 7P3K\|1\|b, 4U26\|1\|BB, 6TC3\|1\|05S1, 4YBB\|1\|CB, 7K00\|1\|b, 6HRM\|1\|3, 7OT5\|1\|3, 4U25\|1\|DB, 6TBV\|1\|05S1, 4WOI\|1\|CB, 7BL4\|1\|B, 6H4N\|1\|B, 7OIZ\|1\|b, 4U25\|1\|BB, 6QUL\|1\|B, 4WOI\|1\|BB, 7B5K\|1\|B, 5WFS\|1\|B, 7OII\|1\|3, 4U24\|1\|DB, 6QDW\|1\|a, 4V9P\|1\|GB, 6ZU1\|1\|BB, 5WDT\|1\|B, 7OIF\|1\|3, 4U24\|1\|BB, 6PJ6\|1\|J, 4V9P\|1\|EB, 6ZTP\|1\|BB, 5NWY\|1\|O, 7O1C\|1\|BB, 4U20\|1\|DB, 6PCT\|1\|J, 4V9P\|1\|CB, 6ZTO\|1\|BB, 5MDV\|1\|3, 7O1A\|1\|BB, 4U20\|1\|BB, 6PCS\|1\|J, 4V9P\|1\|AB, 6YSS\|1\|B, 5J91\|1\|DB, 7NWT\|1\|3, 7O19\|1\|BB, 4U1V\|1\|DB, 6PCR\|1\|J, 4V9O\|1\|GB, 6YS3\|1\|a, 7NSO\|1\|B, 4U1V\|1\|BB, 6PCQ\|1\|J, 4V9O\|1\|EB, 6Y69\|1\|B, 5J91\|1\|CB, 7N31\|1\|5, 4U1U\|1\|DB, 6PCH\|1\|J, 4V9O\|1\|CB, 6XZB\|1\|B2, 5J7L\|1\|DB, 7N30\|1\|5, 4U1U\|1\|BB, 6PC8\|1\|J, 4V9O\|1\|AB, 6XZA\|1\|B2, 5J7L\|1\|CB, 7N2V\|1\|5, 6PC7\|1\|J, 4V9D\|1\|DB, 6XZ7\|1\|B, 5J5B\|1\|DB, 7N2U\|1\|5, 6PC6\|1\|J, 7S1K\|1\|J, 4V9D\|1\|CB, 6WYV\|1\|J, 5J5B\|1\|CB, 6PC5\|1\|J, 7S1H\|1\|J, 4U27\|1\|DB, 6WDE\|1\|2, 5IQR\|1\|3, 7N2C\|1\|5, 6ORE\|1\|3, 7S1G\|1\|J, 4U27\|1\|BB, 6WD0\|1\|2, 5AFI\|1\|B, 7N1P\|1\|5, 6I7V\|1\|DB, 7PJS\|1\|B, 4U26\|1\|DB, 6U48\|1\|CB, 4YBB\|1\|DB, 7LVK\|1\|J	(2) 7ST2\|1\|2, 7ST6\|1\|2	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_3.0_10157.88	NR_3.0_10157.89	3.220	(98) 4V9D\|1\|CB, 6WYV\|1\|J, 4V9P\|1\|EB, 6ZTP\|1\|BB, 5J5B\|1\|CB, 7N2U\|1\|5, 5WDT\|1\|B, 7O1C\|1\|BB, 6PC6\|1\|J, 4U24\|1\|BB, 7S1H\|1\|J, 6PJ6\|1\|J, 4U27\|1\|DB, 6WDE\|1\|2, 4V9P\|1\|CB, 6ZTO\|1\|BB, 5IQR\|1\|3, 7N2C\|1\|5, 5NWY\|1\|O, 6PC5\|1\|J, 4U20\|1\|DB, 6PCT\|1\|J, 7O1A\|1\|BB, 7S1G\|1\|J, 6WD0\|1\|2, 4V9P\|1\|AB, 6YSS\|1\|B, 5AFI\|1\|B, 7N1P\|1\|5, 5MDV\|1\|3, 6ORE\|1\|3, 4U20\|1\|BB, 6PCS\|1\|J, 4U27\|1\|BB, 7O19\|1\|BB, 7PJS\|1\|B, 6U48\|1\|CB, 4V9O\|1\|GB, 6YS3\|1\|a, 4YBB\|1\|DB, 7LVK\|1\|J, 5J91\|1\|DB, 7NWT\|1\|3, 6I7V\|1\|DB, 4U1V\|1\|DB, 6PCR\|1\|J, 4U26\|1\|DB, 7P3K\|1\|b, 6TC3\|1\|05S1, 4V9O\|1\|EB, 6Y69\|1\|B, 4YBB\|1\|CB, 7K00\|1\|b, 5J91\|1\|CB, 7NSO\|1\|B, 6I7V\|1\|CB, 4U1V\|1\|BB, 6PCQ\|1\|J, 4U26\|1\|BB, 7OT5\|1\|3, 6TBV\|1\|05S1, 4V9O\|1\|CB, 6XZB\|1\|B2, 4WOI\|1\|CB, 7BL4\|1\|B, 5J7L\|1\|DB, 7N31\|1\|5, 6HRM\|1\|3, 4U1U\|1\|DB, 6PCH\|1\|J, 4U25\|1\|DB, 7OIZ\|1\|b, 7ST6\|1\|2, 6QUL\|1\|B, 4V9O\|1\|AB, 6XZA\|1\|B2, 4WOI\|1\|BB, 7B5K\|1\|B, 5J7L\|1\|CB, 7N30\|1\|5, 6H4N\|1\|B, 4U1U\|1\|BB, 6PC8\|1\|J, 4U25\|1\|BB, 7OII\|1\|3, 7ST2\|1\|2, 4V9D\|1\|DB, 6XZ7\|1\|B, 4V9P\|1\|GB, 6ZU1\|1\|BB, 5J5B\|1\|DB, 7N2V\|1\|5, 5WFS\|1\|B, 6PC7\|1\|J, 4U24\|1\|DB, 6QDW\|1\|a, 7OIF\|1\|3, 7S1	(0)	(2) 7S1I\|1\|J, 7S1J\|1\|J

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	6YSS\|1\|B	Structure of the P+9 ArfB-ribosome complex in the post-hydrolysis state	ELECTRON MICROSCOPY	2.6	120
2	7PJS\|1\|B	Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)	ELECTRON MICROSCOPY	2.35	120
3	5WDT\|1\|B	70S ribosome-EF-Tu H84A complex with GppNHp	ELECTRON MICROSCOPY	3	120
4	5AFI\|1\|B	2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM	ELECTRON MICROSCOPY	2.9	120
5	5WFS\|1\|B	70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)	ELECTRON MICROSCOPY	3	120
6	6H4N\|1\|B	Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome	ELECTRON MICROSCOPY	3	120
7	6Y69\|1\|B	Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX	ELECTRON MICROSCOPY	2.86	120
8	7ST2\|1\|2	Post translocation, non-rotated 70S ribosome with EF-G dissociated (Structure VII)	ELECTRON MICROSCOPY	2.9	120
9	7ST6\|1\|2	Pre translocation, non-rotated 70S ribosome (Structure I)	ELECTRON MICROSCOPY	3	120
10	6WD0\|1\|2	Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure I-A)	ELECTRON MICROSCOPY	3	120
11	6WDE\|1\|2	Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure V-B)	ELECTRON MICROSCOPY	3	120
12	6WYV\|1\|J	E. coli 50S ribosome bound to compounds 47 and VS1	ELECTRON MICROSCOPY	2.75	118
13	6PC8\|1\|J	E. coli 50S ribosome bound to compound 40q	ELECTRON MICROSCOPY	2.9	118
14	6PC5\|1\|J	E. coli 50S ribosome bound to compounds 46 and VS1	ELECTRON MICROSCOPY	2.7	118
15	6PCR\|1\|J	E. coli 50S ribosome bound to compound 40o	ELECTRON MICROSCOPY	2.5	118
16	6PC6\|1\|J	E. coli 50S ribosome bound to compound 47	ELECTRON MICROSCOPY	2.5	118
17	6PCS\|1\|J	E. coli 50S ribosome bound to compound 40e	ELECTRON MICROSCOPY	2.8	118
18	6PCQ\|1\|J	E. coli 50S ribosome bound to VM2	ELECTRON MICROSCOPY	2.6	118
19	6PC7\|1\|J	E. coli 50S ribosome bound to compound 46	ELECTRON MICROSCOPY	2.5	118
20	6PCT\|1\|J	E. coli 50S ribosome bound to compound 41q	ELECTRON MICROSCOPY	2.8	118
21	6PCH\|1\|J	E. coli 50S ribosome bound to compound 21	ELECTRON MICROSCOPY	2.9	118
22	7BL4\|1\|B	in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle	ELECTRON MICROSCOPY	2.4	119
23	6U48\|1\|CB	E. coli 50S with phazolicin (PHZ) bound in exit tunnel	ELECTRON MICROSCOPY	2.87	118
24	7NSO\|1\|B	Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNA	ELECTRON MICROSCOPY	2.9	120
25	6ORE\|1\|3	Release complex 70S	ELECTRON MICROSCOPY	2.9	120
26	7OT5\|1\|3	CspA-70 cotranslational folding intermediate 1	ELECTRON MICROSCOPY	2.9	120
27	7OIF\|1\|3	CspA-27 cotranslational folding intermediate 2	ELECTRON MICROSCOPY	3	120
28	7OII\|1\|3	CspA-70 cotranslational folding intermediate 2	ELECTRON MICROSCOPY	3	120
29	5NWY\|1\|O	2.9 A cryo-EM structure of VemP-stalled ribosome-nascent chain complex	ELECTRON MICROSCOPY	2.9	118
30	5MDV\|1\|3	Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)	ELECTRON MICROSCOPY	2.97	120
31	7S1G\|1\|J	wild-type Escherichia coli stalled ribosome with antibiotic linezolid	ELECTRON MICROSCOPY	2.48	118
32	7S1H\|1\|J	Wild-type Escherichia coli ribosome with antibiotic linezolid	ELECTRON MICROSCOPY	2.35	118
33	7S1K\|1\|J	Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid	ELECTRON MICROSCOPY	2.42	118
34	7NWT\|1\|3	Initiated 70S ribosome in complex with 2A protein from encephalomyocarditis virus (EMCV)	ELECTRON MICROSCOPY	2.66	120
35	6HRM\|1\|3	E. coli 70S d2d8 stapled ribosome	ELECTRON MICROSCOPY	2.96	120
36	7B5K\|1\|B	E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.	ELECTRON MICROSCOPY	2.9	120
37	7O1C\|1\|BB	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophan	ELECTRON MICROSCOPY	2.6	120
38	7O19\|1\|BB	Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophan	ELECTRON MICROSCOPY	2.9	120
39	7O1A\|1\|BB	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan	ELECTRON MICROSCOPY	2.4	120
40	6TC3\|1\|05S1	Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)	ELECTRON MICROSCOPY	2.7	120
41	6TBV\|1\|05S1	Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)	ELECTRON MICROSCOPY	2.7	120
42	7OIZ\|1\|b	Cryo-EM structure of 70S ribosome stalled with TnaC peptide	ELECTRON MICROSCOPY	2.9	119
43	7P3K\|1\|b	Cryo-EM structure of 70S ribosome stalled with TnaC peptide (control)	ELECTRON MICROSCOPY	2.9	119
44	6ZU1\|1\|BB	E. coli 70S-RNAP expressome complex in uncoupled state 2	ELECTRON MICROSCOPY	3	120
45	6ZTP\|1\|BB	E. coli 70S-RNAP expressome complex in uncoupled state 6	ELECTRON MICROSCOPY	3	120
46	6ZTO\|1\|BB	E. coli 70S-RNAP expressome complex in uncoupled state 1	ELECTRON MICROSCOPY	3	120
47	6XZA\|1\|B2	E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).	ELECTRON MICROSCOPY	2.66	120
48	6XZB\|1\|B2	E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).	ELECTRON MICROSCOPY	2.54	120
49	6XZ7\|1\|B	E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).	ELECTRON MICROSCOPY	2.1	120
50	6QUL\|1\|B	Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid	ELECTRON MICROSCOPY	3	120
51	7N30\|1\|5	Elongating 70S ribosome complex in a hybrid-H2* pre-translocation (PRE-H2*) conformation	ELECTRON MICROSCOPY	2.66	120
52	7N1P\|1\|5	Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation	ELECTRON MICROSCOPY	2.33	120
53	7N31\|1\|5	Elongating 70S ribosome complex in a post-translocation (POST) conformation	ELECTRON MICROSCOPY	2.69	120
54	7K00\|1\|b	Structure of the Bacterial Ribosome at 2 Angstrom Resolution	ELECTRON MICROSCOPY	1.98	119
55	7N2C\|1\|5	Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)	ELECTRON MICROSCOPY	2.72	120
56	7N2V\|1\|5	Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)	ELECTRON MICROSCOPY	2.54	120
57	7N2U\|1\|5	Elongating 70S ribosome complex in a hybrid-H1 pre-translocation (PRE-H1) conformation	ELECTRON MICROSCOPY	2.53	120
58	5J7L\|1\|DB	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-RAY DIFFRACTION	3	120
59	5J5B\|1\|DB	Structure of the WT E coli ribosome bound to tetracycline	X-RAY DIFFRACTION	2.8	120
60	5J91\|1\|DB	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-RAY DIFFRACTION	2.96	120
61	4YBB\|1\|DB	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	120
62	6I7V\|1\|DB	Ribosomal protein paralogs bL31 and bL36	X-RAY DIFFRACTION	2.9	119
63	4U26\|1\|BB	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-RAY DIFFRACTION	2.8	119
64	4U24\|1\|BB	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-RAY DIFFRACTION	2.9	119
65	4U25\|1\|BB	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-RAY DIFFRACTION	2.9	119
66	4U27\|1\|BB	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-RAY DIFFRACTION	2.8	119
67	4U1V\|1\|BB	Crystal structure of the E. coli ribosome bound to linopristin.	X-RAY DIFFRACTION	3	119
68	4U20\|1\|BB	Crystal structure of the E. coli ribosome bound to flopristin.	X-RAY DIFFRACTION	2.9	119
69	4U1U\|1\|BB	Crystal structure of the E. coli ribosome bound to quinupristin.	X-RAY DIFFRACTION	2.95	119
70	4V9D\|1\|CB	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	119
71	4WOI\|1\|BB	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-RAY DIFFRACTION	3	119
72	4V9O\|1\|AB	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	118
73	4V9O\|1\|CB	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	118
74	4V9P\|1\|CB	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	118
75	4V9P\|1\|AB	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	118
76	5IQR\|1\|3	Structure of RelA bound to the 70S ribosome	ELECTRON MICROSCOPY	3	118
77	7LVK\|1\|J	Cfr-modified 50S subunit from Escherichia coli	ELECTRON MICROSCOPY	2.2	118
78	6PJ6\|1\|J	High resolution cryo-EM structure of E.coli 50S	ELECTRON MICROSCOPY	2.2	118
79	4YBB\|1\|CB	High-resolution structure of the Escherichia coli ribosome	X-RAY DIFFRACTION	2.1	118
80	5J7L\|1\|CB	Structure of the 70S E coli ribosome with the U1052G mutation in the 16S rRNA bound to tetracycline	X-RAY DIFFRACTION	3	118
81	5J5B\|1\|CB	Structure of the WT E coli ribosome bound to tetracycline	X-RAY DIFFRACTION	2.8	118
82	5J91\|1\|CB	Structure of the Wild-type 70S E coli ribosome bound to Tigecycline	X-RAY DIFFRACTION	2.96	118
83	4V9O\|1\|EB	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	118
84	4V9P\|1\|EB	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	118
85	4V9D\|1\|DB	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	118
86	4U1U\|1\|DB	Crystal structure of the E. coli ribosome bound to quinupristin.	X-RAY DIFFRACTION	2.95	118
87	4U20\|1\|DB	Crystal structure of the E. coli ribosome bound to flopristin.	X-RAY DIFFRACTION	2.9	118
88	4U1V\|1\|DB	Crystal structure of the E. coli ribosome bound to linopristin.	X-RAY DIFFRACTION	3	118
89	4U27\|1\|DB	Crystal structure of the E. coli ribosome bound to flopristin and linopristin.	X-RAY DIFFRACTION	2.8	118
90	4U25\|1\|DB	Crystal structure of the E. coli ribosome bound to virginiamycin M1.	X-RAY DIFFRACTION	2.9	118
91	4U24\|1\|DB	Crystal structure of the E. coli ribosome bound to dalfopristin.	X-RAY DIFFRACTION	2.9	118
92	4U26\|1\|DB	Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.	X-RAY DIFFRACTION	2.8	118
93	6I7V\|1\|CB	Ribosomal protein paralogs bL31 and bL36	X-RAY DIFFRACTION	2.9	118
94	4WOI\|1\|CB	4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2	X-RAY DIFFRACTION	3	118
95	4V9P\|1\|GB	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	118
96	4V9O\|1\|GB	Control of ribosomal subunit rotation by elongation factor G	X-RAY DIFFRACTION	2.9	118
97	6YS3\|1\|a	Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide	ELECTRON MICROSCOPY	2.58	118
98	6QDW\|1\|a	Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide	ELECTRON MICROSCOPY	2.83	118

Equivalence class NR_3.0_10157.88 Obsolete

Release history

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