BGSU RNA Site //

Equivalence class NR_3.0_10255.19 Obsolete

#IFECompound(s)RNA source organismTitleMethodResolutionDate
17O7Y|1|B7 (rep)5S rRNAOryctolagus cuniculusRabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)ELECTRON MICROSCOPY2.22021-06-02
27O7Z|1|B75SOryctolagus cuniculusRabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)ELECTRON MICROSCOPY2.42021-06-02
37OBR|1|75S ribosomal RNAOryctolagus cuniculusRNC-SRP early complexELECTRON MICROSCOPY2.82021-07-21
46SGC|1|745S ribosomal RNAOryctolagus cuniculusRabbit 80S ribosome stalled on a poly(A) tailELECTRON MICROSCOPY2.82019-12-04
57O80|1|B75S rRNAOryctolagus cuniculusRabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery siteELECTRON MICROSCOPY2.92021-06-02
66R5Q|1|75S rRNAOryctolagus cuniculusStructure of XBP1u-paused ribosome nascent chain complex (post-state)ELECTRON MICROSCOPY32019-07-10

Release history

Release3.1883.1893.1903.1913.1923.193
Date2021-07-212021-07-282021-08-042021-08-112021-08-182021-08-25

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.0_10255.19NR_3.0_10255.183.188(5) 7O80|1|B7, 7O7Z|1|B7, 7O7Y|1|B7, 6SGC|1|74, 6R5Q|1|7(1) 7OBR|1|7(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.0_10255.19NR_3.0_10255.203.194(6) 6R5Q|1|7, 6SGC|1|74, 7O7Y|1|B7, 7O7Z|1|B7, 7O80|1|B7, 7OBR|1|7(0) (0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17O80|1|B7Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery siteELECTRON MICROSCOPY2.9119
27O7Y|1|B7Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)ELECTRON MICROSCOPY2.2119
37O7Z|1|B7Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)ELECTRON MICROSCOPY2.4119
46SGC|1|74Rabbit 80S ribosome stalled on a poly(A) tailELECTRON MICROSCOPY2.8119
56R5Q|1|7Structure of XBP1u-paused ribosome nascent chain complex (post-state)ELECTRON MICROSCOPY3120
67OBR|1|7RNC-SRP early complexELECTRON MICROSCOPY2.8120