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Equivalence class NR_3.0_10255.24 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
17O7Y|1|B7 (rep)5S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)Electron microscopy2.22021-06-02
27O7Z|1|B75S ribosomal RNA5SOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)Electron microscopy2.42021-06-02
37UCK|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF0000180S translation initiation complex with ac4c(-1) mRNA and HarringtonineElectron microscopy2.82022-06-01
47OBR|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001RNC-SRP early complexElectron microscopy2.82021-07-21
57QWQ|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Ternary complex of ribosome nascent chain with SRP and NACElectron microscopy2.832022-03-16
66SGC|1|745S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome stalled on a poly(A) tailElectron microscopy2.82019-12-04
77QWR|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NACElectron microscopy2.92022-03-09
87O80|1|B75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery siteElectron microscopy2.92021-06-02
97TOR|1|A5S5S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20Electron microscopy2.92022-05-25
106R5Q|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Structure of XBP1u-paused ribosome nascent chain complex (post-state)Electron microscopy32019-07-10

Release history

Release3.2333.2343.2353.2363.2373.2383.239
Date2022-06-012022-06-082022-06-152022-06-222022-06-292022-07-062022-07-13

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.0_10255.24NR_3.0_10255.233.233(9) 7TOR|1|A5S, 7QWR|1|7, 7QWQ|1|7, 7OBR|1|7, 7O80|1|B7, 7O7Z|1|B7, 7O7Y|1|B7, 6SGC|1|74, 6R5Q|1|7(1) 7UCK|1|7(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.0_10255.24NR_3.0_10255.253.240(10) 6R5Q|1|7, 7UCK|1|7, 7TOR|1|A5S, 7QWR|1|7, 7QWQ|1|7, 7OBR|1|7, 7O80|1|B7, 7O7Z|1|B7, 7O7Y|1|B7, 6SGC|1|74(0) (1) 7OYD|1|K

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17O80|1|B7Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery siteELECTRON MICROSCOPY2.9119
27O7Y|1|B7Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)ELECTRON MICROSCOPY2.2119
37O7Z|1|B7Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)ELECTRON MICROSCOPY2.4119
46SGC|1|74Rabbit 80S ribosome stalled on a poly(A) tailELECTRON MICROSCOPY2.8119
57UCK|1|780S translation initiation complex with ac4c(-1) mRNA and HarringtonineELECTRON MICROSCOPY2.8120
67TOR|1|A5SMammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20ELECTRON MICROSCOPY2.9120
76R5Q|1|7Structure of XBP1u-paused ribosome nascent chain complex (post-state)ELECTRON MICROSCOPY3120
87OBR|1|7RNC-SRP early complexELECTRON MICROSCOPY2.8120
97QWQ|1|7Ternary complex of ribosome nascent chain with SRP and NACELECTRON MICROSCOPY2.83120
107QWR|1|7Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NACELECTRON MICROSCOPY2.9120
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