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Equivalence class NR_3.0_10255.30 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
17O7Y|1|B7 (rep)5S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)Electron microscopy2.22021-06-02
27OYD|1|K5S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1bElectron microscopy2.32022-07-20
37O7Z|1|B75S ribosomal RNA5SOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)Electron microscopy2.42021-06-02
48B6C|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147Electron microscopy2.792023-02-22
57UCK|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF0000180S translation initiation complex with ac4c(-1) mRNA and HarringtonineElectron microscopy2.82022-06-01
67OBR|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001RNC-SRP early complexElectron microscopy2.82021-07-21
77QWQ|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Ternary complex of ribosome nascent chain with SRP and NACElectron microscopy2.832022-03-16
87ZJW|1|L75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome as it decodes the Sec-UGA codonElectron microscopy2.82022-10-19
98B5L|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complexElectron microscopy2.862023-03-01
106SGC|1|745S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome stalled on a poly(A) tailElectron microscopy2.82019-12-04
117QWR|1|75S ribosomal RNA5S ribosomal RNAOryctolagus cuniculusEukaryaRF00001Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NACElectron microscopy2.92022-03-09
127O80|1|B75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery siteElectron microscopy2.92021-06-02
137TOR|1|A5S5S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20Electron microscopy2.92022-05-25
146R5Q|1|75S ribosomal RNA5S rRNAOryctolagus cuniculusEukaryaRF00001Structure of XBP1u-paused ribosome nascent chain complex (post-state)Electron microscopy32019-07-10

Release history

Release3.2843.2853.2863.2873.2883.289
Date2023-05-242023-05-312023-06-072023-06-142023-06-212023-06-28

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.0_10255.30NR_3.0_10255.293.284(14) 6R5Q|1|7, 8B5L|1|7, 7ZJW|1|L7, 7UCK|1|7, 7TOR|1|A5S, 7QWR|1|7, 7QWQ|1|7, 7OYD|1|K, 7OBR|1|7, 7O80|1|B7, 7O7Z|1|B7, 7O7Y|1|B7, 6SGC|1|74, 8B6C|1|7(0) (0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.0_10255.30NR_3.0_10255.313.290(14) 6R5Q|1|7, 8B6C|1|7, 8B5L|1|7, 7ZJW|1|L7, 7UCK|1|7, 7TOR|1|A5S, 7QWR|1|7, 7QWQ|1|7, 7OYD|1|K, 7OBR|1|7, 7O80|1|B7, 7O7Z|1|B7, 7O7Y|1|B7, 6SGC|1|74(0) (1) 8BPO|1|B1

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17O80|1|B7Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery siteELECTRON MICROSCOPY2.9119
27O7Y|1|B7Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)ELECTRON MICROSCOPY2.2119
37O7Z|1|B7Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)ELECTRON MICROSCOPY2.4119
46SGC|1|74Rabbit 80S ribosome stalled on a poly(A) tailELECTRON MICROSCOPY2.8119
57ZJW|1|L7Rabbit 80S ribosome as it decodes the Sec-UGA codonELECTRON MICROSCOPY2.8119
67OYD|1|KCryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1bELECTRON MICROSCOPY2.3119
78B6C|1|7Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147ELECTRON MICROSCOPY2.79120
88B5L|1|7Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complexELECTRON MICROSCOPY2.86120
97UCK|1|780S translation initiation complex with ac4c(-1) mRNA and HarringtonineELECTRON MICROSCOPY2.8120
107TOR|1|A5SMammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20ELECTRON MICROSCOPY2.9120
116R5Q|1|7Structure of XBP1u-paused ribosome nascent chain complex (post-state)ELECTRON MICROSCOPY3120
127OBR|1|7RNC-SRP early complexELECTRON MICROSCOPY2.8120
137QWQ|1|7Ternary complex of ribosome nascent chain with SRP and NACELECTRON MICROSCOPY2.83120
147QWR|1|7Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NACELECTRON MICROSCOPY2.9120
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