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Equivalence class NR_3.0_12763.26 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
17QI4|1|A (rep)Large subunit ribosomal RNA16S mitochondrial rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome at 2.2 A resolutionElectron microscopy2.212022-07-13
27OF0|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1).Electron microscopy2.22021-06-09
36ZM6|1|ALarge subunit ribosomal RNA16S mitochondrial rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNAElectron microscopy2.592021-01-13
47QI5|1|ALarge subunit ribosomal RNA16S mitochondrial rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolutionElectron microscopy2.632023-07-05
57O9M|1|ALarge subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU moduleElectron microscopy2.52021-06-30
67OF6|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2).Electron microscopy2.62021-06-09
78OIT|1|B8Large subunit ribosomal RNA16S rRNAHomo sapiensMitochondriaRF0254139S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNAElectron microscopy2.92023-06-14
87OF4|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1).Electron microscopy2.72021-06-09
96ZM5|1|ALarge subunit ribosomal RNA16S mitochondrial rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptideElectron microscopy2.892021-01-13
107OF7|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1).Electron microscopy2.52021-06-23
117QI6|1|ALarge subunit ribosomal RNA16S mitochondrial rRNAHomo sapiensMitochondriaRF02541Human mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolutionElectron microscopy2.982023-05-17
126VMI|1|ALarge subunit ribosomal RNA16s rRNAHomo sapiensMitochondriaRF02541Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)Electron microscopy2.962020-08-05
136VLZ|1|ALarge subunit ribosomal RNA16s rRNAHomo sapiensMitochondriaRF02541Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)Electron microscopy2.972020-08-05
147OF2|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6.Electron microscopy2.72021-06-02
157OF3|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2).Electron microscopy2.72021-05-19
167ODR|1|ALarge subunit ribosomal RNA16S mitochondrial rRNA, DNA (31-MER),16S mitochondrial rRNAHomo sapiensMitochondriaRF02541State A of the human mitoribosomal large subunit assembly intermediateElectron microscopy2.92021-06-23
177OF5|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensMitochondriaRF02541Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2).Electron microscopy2.92021-06-09
187PO4|1|ALarge subunit ribosomal RNA16SrRNAHomo sapiensMitochondriaRF02541Assembly intermediate of human mitochondrial ribosome large subunit (largely unfolded rRNA with MALSU1, L0R8F8 and ACP)Electron microscopy2.562022-06-15
197QH7|1|ALarge subunit ribosomal RNA16S ribosomal RNAHomo sapiensEukaryaRF02541Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 4Electron microscopy2.892022-05-18

Release history

Release3.2903.2913.2923.2933.2943.295
Date2023-07-052023-07-122023-07-192023-07-262023-08-022023-08-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.0_12763.26NR_3.0_12763.253.290(18) 7OF7|1|A, 7OF6|1|A, 7OF5|1|A, 7OF4|1|A, 7OF3|1|A, 7OF2|1|A, 7OF0|1|A, 7ODR|1|A, 7O9M|1|A, 6ZM6|1|A, 6ZM5|1|A, 6VMI|1|A, 6VLZ|1|A, 8OIT|1|B8, 7QI6|1|A, 7QI4|1|A, 7QH7|1|A, 7PO4|1|A(1) 7QI5|1|A(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.0_12763.26NR_3.0_12763.273.296(19) 6VLZ|1|A, 7QI5|1|A, 7QI4|1|A, 7QH7|1|A, 7PO4|1|A, 7OF7|1|A, 7OF6|1|A, 7OF5|1|A, 7OF4|1|A, 7OF3|1|A, 7OF2|1|A, 7OF0|1|A, 7ODR|1|A, 7O9M|1|A, 6ZM6|1|A, 6ZM5|1|A, 8OIT|1|B8, 6VMI|1|A, 7QI6|1|A(0) (1) 8ANY|1|A

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17PO4|1|AAssembly intermediate of human mitochondrial ribosome large subunit (largely unfolded rRNA with MALSU1, L0R8F8 and ACP)ELECTRON MICROSCOPY2.561145
27OF7|1|AStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1).ELECTRON MICROSCOPY2.51373
37OF5|1|AStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2).ELECTRON MICROSCOPY2.91386
47OF2|1|AStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6.ELECTRON MICROSCOPY2.71407
57OF4|1|AStructure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1).ELECTRON MICROSCOPY2.71460
67OF6|1|AStructure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2).ELECTRON MICROSCOPY2.61460
78OIT|1|B839S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNAELECTRON MICROSCOPY2.91553
87QI4|1|AHuman mitochondrial ribosome at 2.2 A resolutionELECTRON MICROSCOPY2.211553
97QI5|1|AHuman mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolutionELECTRON MICROSCOPY2.631553
106ZM6|1|AHuman mitochondrial ribosome in complex with mRNA, A/A tRNA and P/P tRNAELECTRON MICROSCOPY2.591531
116ZM5|1|AHuman mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptideELECTRON MICROSCOPY2.891534
127QI6|1|AHuman mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolutionELECTRON MICROSCOPY2.981553
136VLZ|1|AStructure of the human mitochondrial ribosome-EF-G1 complex (ClassI)ELECTRON MICROSCOPY2.971527
146VMI|1|AStructure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)ELECTRON MICROSCOPY2.961527
157QH7|1|ACryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 4ELECTRON MICROSCOPY2.891256
167OF0|1|AStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset1).ELECTRON MICROSCOPY2.21376
177OF3|1|AStructure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2).ELECTRON MICROSCOPY2.71386
187ODR|1|AState A of the human mitoribosomal large subunit assembly intermediateELECTRON MICROSCOPY2.91417
197O9M|1|AHuman mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU moduleELECTRON MICROSCOPY2.51453
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