RNA 3D Hub //

Equivalence class NR_3.0_18586.55 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15TBW|1|AS (rep)5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-ray diffraction32017-07-26
25TBW|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-ray diffraction32017-07-26
34V88|1|A35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction32014-07-09
44V88|1|A75S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001The structure of the eukaryotic ribosome at 3.0 A resolution.X-ray diffraction32014-07-09
57OSA|1|AB5S ribosomal RNA5SSaccharomyces cerevisiaeEukaryaRF00001Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-ray diffraction32021-12-08
67OSM|1|AB5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-ray diffraction32021-12-08
77UOO|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiae BY4741EukaryaRF00001Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation stateElectron microscopy2.342023-03-15
87V08|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiae BY4741EukaryaRF00001Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strainElectron microscopy2.362023-03-15
97ZW0|1|LC5S ribosomal RNA5S ribosomal RNA (RDN5-1)Saccharomyces cerevisiae W303EukaryaRF00001FAP-80S Complex - Rotated stateElectron microscopy2.42022-10-05
108AGX|1|h5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast RQC complex in state with the RING domain of Ltn1 in the IN positionElectron microscopy2.42023-03-08
117TOP|1|A5S5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20Electron microscopy2.42022-05-25
127UQB|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiae BY4741EukaryaRF00001Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4Electron microscopy2.432023-03-15
137UQZ|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiae BY4741EukaryaRF00001Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strainElectron microscopy2.442023-03-15
147ZUX|1|45S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Collided ribosome in a disome unit from S. cerevisiaeElectron microscopy2.52023-02-22
158AAF|1|h5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast RQC complex in state GElectron microscopy2.52023-03-08
166T4Q|1|C45S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.Electron microscopy2.62019-12-25
178AGW|1|h5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast RQC complex in state DElectron microscopy2.62023-03-08
188AGT|1|h5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast RQC complex in state FElectron microscopy2.62023-03-08
198AGV|1|h5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast RQC complex in state HElectron microscopy2.62023-03-08
208AGZ|1|h5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast RQC complex in state with the RING domain of Ltn1 in the OUT positionElectron microscopy2.62023-03-08
218AGU|1|h5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast RQC complex in state EElectron microscopy2.72023-03-08
227TOO|1|A5S5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20Electron microscopy2.72022-05-25
237MPJ|1|A35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Stm1 bound vacant 80S structure isolated from nop1-D243AElectron microscopy2.72022-05-11
246TB3|1|BR5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexElectron microscopy2.82020-04-22
256SNT|1|45S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast 80S ribosome stalled on SDD1 mRNA.Electron microscopy2.82020-03-04
267AZY|1|F5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiae S288CEukaryaRF00001Context-specific inhibition of eukaryotic translation by macrolide antibioticsElectron microscopy2.8772021-05-19
274U4R|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.82014-10-22
284U3U|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.92014-10-22
296WOO|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPElectron microscopy2.92020-09-23
307UG6|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiae S288CEukaryaRF00001Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922Electron microscopy2.92022-12-21
314U4R|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-ray diffraction2.82014-10-22
324U3U|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-ray diffraction2.92014-10-22
334U4Q|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
344U4Q|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
354U3M|1|75S ribosomal RNA5.8s rRNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
364U52|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
374U3M|1|35S ribosomal RNA5.8s rRNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
384U4U|1|75S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
396YLG|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)Electron microscopy32020-07-29
404U52|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-ray diffraction32014-10-22
414U4U|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Crystal structure of Lycorine bound to the yeast 80S ribosomeX-ray diffraction32014-10-22

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16YLG|1|3Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)ELECTRON MICROSCOPY3117
27OSM|1|ABIntermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-RAY DIFFRACTION3121
37OSA|1|ABPre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligandsX-RAY DIFFRACTION3121
47ZUX|1|4Collided ribosome in a disome unit from S. cerevisiaeELECTRON MICROSCOPY2.5121
57ZW0|1|LCFAP-80S Complex - Rotated stateELECTRON MICROSCOPY2.4121
68AGW|1|hYeast RQC complex in state DELECTRON MICROSCOPY2.6121
78AGZ|1|hYeast RQC complex in state with the RING domain of Ltn1 in the OUT positionELECTRON MICROSCOPY2.6121
88AGV|1|hYeast RQC complex in state HELECTRON MICROSCOPY2.6121
98AGT|1|hYeast RQC complex in state FELECTRON MICROSCOPY2.6121
108AGX|1|hYeast RQC complex in state with the RING domain of Ltn1 in the IN positionELECTRON MICROSCOPY2.4121
118AAF|1|hYeast RQC complex in state GELECTRON MICROSCOPY2.5121
128AGU|1|hYeast RQC complex in state EELECTRON MICROSCOPY2.7121
136T4Q|1|C4Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.ELECTRON MICROSCOPY2.6121
146SNT|1|4Yeast 80S ribosome stalled on SDD1 mRNA.ELECTRON MICROSCOPY2.8121
156TB3|1|BRyeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complexELECTRON MICROSCOPY2.8121
167TOP|1|A5SYeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20ELECTRON MICROSCOPY2.4121
177TOO|1|A5SYeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20ELECTRON MICROSCOPY2.7121
185TBW|1|3Crystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
194V88|1|A3The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION3121
204U4R|1|3Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.8121
214U3U|1|3Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.9121
224U3M|1|3Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
234U4U|1|3Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
244U4Q|1|3Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
254U52|1|3Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
265TBW|1|ASCrystal structure of chlorolissoclimide bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
274U3M|1|7Crystal structure of Anisomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
284U4R|1|7Crystal structure of Lactimidomycin bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.8121
294U3U|1|7Crystal structure of Cycloheximide bound to the yeast 80S ribosomeX-RAY DIFFRACTION2.9121
304V88|1|A7The structure of the eukaryotic ribosome at 3.0 A resolution.X-RAY DIFFRACTION3121
314U4Q|1|7Crystal structure of Homoharringtonine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
324U4U|1|7Crystal structure of Lycorine bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
334U52|1|7Crystal structure of Nagilactone C bound to the yeast 80S ribosomeX-RAY DIFFRACTION3121
347MPJ|1|A3Stm1 bound vacant 80S structure isolated from nop1-D243AELECTRON MICROSCOPY2.7120
357AZY|1|FContext-specific inhibition of eukaryotic translation by macrolide antibioticsELECTRON MICROSCOPY2.877121
366WOO|1|7CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDPELECTRON MICROSCOPY2.9121
377UG6|1|3Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922ELECTRON MICROSCOPY2.9121
387UQB|1|3Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4ELECTRON MICROSCOPY2.43120
397UOO|1|3Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation stateELECTRON MICROSCOPY2.34120
407UQZ|1|3Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strainELECTRON MICROSCOPY2.44120
417V08|1|3Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strainELECTRON MICROSCOPY2.36120
Copyright 2024 BGSU RNA group. Page generated in 0.7611 s