#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16CB3|1|B (rep)RNA (99-MER)Lactococcus lactisCrystal structure of the L.Lactis YkoY riboswitch bound to cadmiumX-ray diffraction1.892018-06-13
26CB3|1|ARNA (99-MER)Lactococcus lactisCrystal structure of the L.Lactis YkoY riboswitch bound to cadmiumX-ray diffraction1.892018-06-13
34Y1J|1|AyybP-ykoY riboswitchLactococcus lactisLactococcus lactis yybP-ykoY Mn riboswitch A41U binding site mutant in presence of Mn2+X-ray diffraction2.242015-04-08
44Y1J|1|ByybP-ykoY riboswitchLactococcus lactisLactococcus lactis yybP-ykoY Mn riboswitch A41U binding site mutant in presence of Mn2+X-ray diffraction2.242015-04-08
56CC3|1|AyybP-ykoY manganese riboswitchRNA (101-MER)Lactococcus lactisBacteriaRF00080Crystal structure of ykoY-mntP riboswitch chimera bound to cadmiumX-ray diffraction2.72018-06-13
64Y1I|1|ALactococcus lactis yybP-ykoY riboswitchLactococcus lactisLactococcus lactis yybP-ykoY Mn riboswitch bound to Mn2+X-ray diffraction2.852015-04-08
74Y1I|1|BLactococcus lactis yybP-ykoY riboswitchLactococcus lactisLactococcus lactis yybP-ykoY Mn riboswitch bound to Mn2+X-ray diffraction2.852015-04-08
86CC3|1|ByybP-ykoY manganese riboswitchRNA (101-MER)Lactococcus lactisBacteriaRF00080Crystal structure of ykoY-mntP riboswitch chimera bound to cadmiumX-ray diffraction2.72018-06-13
96CC1|1|ByybP-ykoY manganese riboswitchRNA (94-MER)Lactococcus lactisBacteriaRF00080Crystal structure of ykoY-alx riboswitch chimera bound to cadmiumX-ray diffraction2.542018-06-13
106CC1|1|AyybP-ykoY manganese riboswitchRNA (94-MER)Lactococcus lactisBacteriaRF00080Crystal structure of ykoY-alx riboswitch chimera bound to cadmiumX-ray diffraction2.542018-06-13

Release history

Release3.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.963.973.983.993.1003.1013.1023.1033.1043.1053.1063.1073.1083.1093.1103.1113.1123.1133.1143.1153.1163.1173.1183.1193.1203.1213.1223.1233.1243.1253.1263.1273.1283.1293.1303.1313.1323.1333.1343.1353.1363.1373.1383.1393.1403.1413.1423.1433.1443.1453.1463.1473.1483.1493.1503.1513.1523.1533.1543.1553.1563.1573.1583.1593.1603.1613.1623.1633.1643.1653.1663.1673.1683.1693.1703.1713.1723.1733.1743.1753.1763.1773.1783.1793.1803.1813.1823.1833.1843.1853.1863.1873.1883.1893.1903.1913.1923.1933.1943.1953.1963.1973.1983.1993.2003.2013.2023.2033.2043.2053.2063.2073.2083.2093.2103.2113.2123.2133.2143.2153.2163.2173.2183.2193.2203.2213.2223.2233.2243.2253.2263.2273.2283.2293.2303.2313.2323.2333.2343.2353.2363.2373.2383.2393.2403.2413.2423.2433.2443.2453.2463.2473.2483.2493.2503.2513.2523.2533.2543.2553.2563.2573.2583.2593.2603.2613.2623.2633.2643.2653.2663.2673.2683.2693.2703.2713.2723.2733.2743.2753.2763.2773.2783.2793.2803.2813.2823.2833.2843.2853.2863.2873.2883.2893.2903.2913.2923.2933.2943.2953.2963.2973.2983.2993.3003.3013.3023.3033.3043.3053.3063.3073.3083.3093.3103.3113.3123.3133.3143.3153.3163.3173.3183.3193.3203.3213.3223.3233.3243.3253.3263.3273.3283.3293.3303.3313.3323.3333.3343.3353.3363.3373.3383.3393.3403.3413.3423.3433.344
Date2019-02-012019-02-082019-02-152019-02-222019-03-012019-03-082019-03-152019-03-222019-03-292019-04-052019-04-122019-04-192019-04-262019-05-032019-05-102019-05-172019-05-242019-05-312019-06-072019-06-142019-06-212019-06-282019-07-052019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-232019-08-282019-09-042019-09-112019-09-192019-09-252019-10-032019-10-092019-10-162019-10-232019-10-302019-11-062019-11-132019-11-202019-11-272019-12-042019-12-112019-12-182019-12-252020-01-012020-01-082020-01-152020-01-222020-01-292020-02-052020-02-122020-02-192020-02-262020-03-042020-03-112020-03-182020-03-252020-04-012020-04-082020-04-152020-04-222020-04-292020-05-062020-05-132020-05-202020-05-272020-06-032020-06-102020-06-172020-06-242020-07-012020-07-082020-07-152020-07-222020-07-292020-08-052020-08-122020-08-192020-08-262020-09-022020-09-092020-09-162020-09-232020-09-302020-10-072020-10-142020-10-212020-10-282020-11-042020-11-112020-11-182020-11-252020-12-022020-12-092020-12-162020-12-232020-12-302021-01-062021-01-132021-01-202021-01-272021-02-032021-02-102021-02-172021-02-242021-03-032021-03-102021-03-172021-03-242021-03-312021-04-072021-04-142021-04-212021-04-282021-05-052021-05-122021-05-192021-05-262021-06-022021-06-092021-06-162021-06-232021-06-302021-07-072021-07-142021-07-212021-07-282021-08-042021-08-112021-08-182021-08-252021-09-012021-09-082021-09-152021-09-222021-09-292021-10-062021-10-132021-10-202021-10-272021-11-032021-11-102021-11-172021-11-242021-12-012021-12-082021-12-152021-12-222021-12-292022-01-052022-01-122022-01-192022-01-262022-02-022022-02-092022-02-162022-02-232022-03-022022-03-092022-03-162022-03-232022-03-302022-04-062022-04-132022-04-202022-04-272022-05-042022-05-112022-05-182022-05-252022-06-012022-06-082022-06-152022-06-222022-06-292022-07-062022-07-132022-07-202022-07-272022-08-032022-08-102022-08-172022-08-242022-08-312022-09-072022-09-142022-09-212022-09-282022-10-052022-10-122022-10-192022-10-262022-11-022022-11-092022-11-162022-11-232022-11-302022-12-072022-12-142022-12-212022-12-282023-01-042023-01-112023-01-182023-01-252023-02-012023-02-082023-02-152023-02-222023-03-012023-03-082023-03-152023-03-222023-03-292023-04-052023-04-122023-04-192023-04-262023-05-032023-05-102023-05-172023-05-242023-05-312023-06-072023-06-142023-06-212023-06-282023-07-052023-07-122023-07-192023-07-262023-08-022023-08-092023-08-162023-08-232023-08-302023-09-062023-09-132023-09-202023-09-272023-10-042023-10-112023-10-182023-10-252023-11-012023-11-082023-11-152023-11-242023-11-292023-12-062023-12-132023-12-202023-12-272024-01-032024-01-102024-01-172024-01-242024-01-312024-02-072024-02-142024-02-212024-02-282024-03-062024-03-132024-03-202024-03-272024-04-032024-04-102024-04-172024-04-242024-05-012024-05-082024-05-152024-05-222024-05-292024-06-052024-06-122024-06-192024-06-262024-07-032024-07-102024-07-17

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.0_18848.1NR_3.0_00143.13.59(4) 4Y1I|1|B, 4Y1I|1|A, 4Y1J|1|B, 4Y1J|1|A(6) 6CB3|1|A, 6CC3|1|B, 6CC3|1|A, 6CC1|1|B, 6CC1|1|A, 6CB3|1|B(0)
NR_3.0_18848.1NR_3.0_66115.13.59(6) 6CC1|1|B, 6CC1|1|A, 6CB3|1|B, 6CB3|1|A, 6CC3|1|B, 6CC3|1|A(4) 4Y1J|1|A, 4Y1I|1|B, 4Y1I|1|A, 4Y1J|1|B(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14Y1J|1|BLactococcus lactis yybP-ykoY Mn riboswitch A41U binding site mutant in presence of Mn2+X-RAY DIFFRACTION2.24100
24Y1J|1|ALactococcus lactis yybP-ykoY Mn riboswitch A41U binding site mutant in presence of Mn2+X-RAY DIFFRACTION2.24100
34Y1I|1|ALactococcus lactis yybP-ykoY Mn riboswitch bound to Mn2+X-RAY DIFFRACTION2.85100
44Y1I|1|BLactococcus lactis yybP-ykoY Mn riboswitch bound to Mn2+X-RAY DIFFRACTION2.85100
56CB3|1|BCrystal structure of the L.Lactis YkoY riboswitch bound to cadmiumX-RAY DIFFRACTION1.8999
66CC1|1|BCrystal structure of ykoY-alx riboswitch chimera bound to cadmiumX-RAY DIFFRACTION2.54100
76CC1|1|ACrystal structure of ykoY-alx riboswitch chimera bound to cadmiumX-RAY DIFFRACTION2.5494
86CB3|1|ACrystal structure of the L.Lactis YkoY riboswitch bound to cadmiumX-RAY DIFFRACTION1.8999
96CC3|1|ACrystal structure of ykoY-mntP riboswitch chimera bound to cadmiumX-RAY DIFFRACTION2.7100
106CC3|1|BCrystal structure of ykoY-mntP riboswitch chimera bound to cadmiumX-RAY DIFFRACTION2.792
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