NR_3.0_19951.1

Members (38)
History
Heat map

#	IFE	Compound(s)	RNA source organism	Title	Method	Resolution	Date
1	2ZM5\|1\|C (rep)	tRNA(Phe)	Escherichia coli	Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe)	X-RAY DIFFRACTION	2.55	2009-04-14
2	2ZXU\|1\|C	tRNA(Phe)	Escherichia coli	Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPP	X-RAY DIFFRACTION	2.75	2009-05-26
3	3FOZ\|1\|C	tRNA(Phe)		Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe)	X-RAY DIFFRACTION	2.5	2009-01-20
4	3L0U\|1\|A	Unmodified tRNAPhe		The crystal structure of unmodified tRNAPhe from Escherichia coli	X-RAY DIFFRACTION	3	2010-03-16
5	4V9D\|1\|BV	phenylalanine specific transfer RNA, messenger RNA	Escherichia coli	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	2014-07-09
6	3FOZ\|1\|D	tRNA(Phe)		Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe)	X-RAY DIFFRACTION	2.5	2009-01-20
7	2ZM5\|1\|D	tRNA(Phe)	Escherichia coli	Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe)	X-RAY DIFFRACTION	2.55	2009-04-14
8	4W2F\|1\|AW	A/P-site tRNA, mRNA	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	2014-10-15
9	2ZXU\|1\|D	tRNA(Phe)	Escherichia coli	Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPP	X-RAY DIFFRACTION	2.75	2009-05-26
10	4W2E\|1\|w	P-site tRNA, mRNA	Escherichia coli	Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.9	2014-10-01
11	4V9H\|1\|AV	PE hybrid state tRNA Phe, mRNA	Escherichia coli	Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state	X-RAY DIFFRACTION	2.86	2014-07-09
12	1VY5\|1\|AW	A-site tRNA, mRNA	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-RAY DIFFRACTION	2.55	2014-08-20
13	4W2I\|1\|AW	A/P-site tRNA, mRNA	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.7	2014-10-15
14	1VY4\|1\|AY	E-site tRNA	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-RAY DIFFRACTION	2.6	2014-08-20
15	4W2E\|1\|x	E-site tRNA	Escherichia coli	Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.9	2014-10-01
16	4W2G\|1\|AW	A/P-site tRNA, mRNA	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.55	2014-10-15
17	1VY5\|1\|CW	A-site tRNA, mRNA	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-RAY DIFFRACTION	2.55	2014-08-20
18	1VY4\|1\|AW	A-site tRNA, mRNA	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-RAY DIFFRACTION	2.6	2014-08-20
19	4V9D\|1\|AV	phenylalanine specific transfer RNA, messenger RNA	Escherichia coli	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	2014-07-09
20	4W2G\|1\|AY	A/P-site tRNA	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.55	2014-10-15
21	4W2F\|1\|AY	A/P-site tRNA	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	2014-10-15
22	1VY4\|1\|CW	A-site tRNA, mRNA	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-RAY DIFFRACTION	2.6	2014-08-20
23	4W2G\|1\|CW	A/P-site tRNA, mRNA	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.55	2014-10-15
24	4W2F\|1\|CY	A/P-site tRNA	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	2014-10-15
25	1VY4\|1\|CY	E-site tRNA	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-RAY DIFFRACTION	2.6	2014-08-20
26	4W2G\|1\|CY	A/P-site tRNA	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.55	2014-10-15
27	4V51\|1\|AW	E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES)	Escherichia coli	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-RAY DIFFRACTION	2.8	2014-07-09
28	1VY5\|1\|AY	E-site tRNA	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-RAY DIFFRACTION	2.55	2014-08-20
29	4W2I\|1\|AY	A/P-site tRNA	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.7	2014-10-15
30	4W2I\|1\|CW	A/P-site tRNA, mRNA	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.7	2014-10-15
31	4W2I\|1\|CY	A/P-site tRNA	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.7	2014-10-15
32	4W2F\|1\|CW	A/P-site tRNA, mRNA	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	2014-10-15
33	4V51\|1\|CW	E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES)	Escherichia coli	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-RAY DIFFRACTION	2.8	2014-07-09
34	1VY5\|1\|CY	E-site tRNA	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-RAY DIFFRACTION	2.55	2014-08-20
35	4W2H\|1\|AY	E-site tRNA Acceptor Stem	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-RAY DIFFRACTION	2.7	2014-10-15
36	1VY7\|1\|AY	E-site tRNA	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.8	2014-08-20
37	1VY7\|1\|CY	E-site tRNA	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.8	2014-08-20
38	4W2H\|1\|CY	E-site tRNA Acceptor Stem	Escherichia coli	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-RAY DIFFRACTION	2.7	2014-10-15

Release history

Release	2.0	2.1	2.2	2.3	2.4	2.5	2.6	2.7
Date	2014-12-05	2014-12-12	2014-12-19	2014-12-26	2015-01-02	2015-01-09	2015-01-16	2015-01-23

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	1VY7\|1\|AY	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.8	5
2	1VY7\|1\|CY	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.8	5
3	4W2H\|1\|AY	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-RAY DIFFRACTION	2.7	18
4	1VY4\|1\|AY	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-RAY DIFFRACTION	2.6	67
5	4W2E\|1\|x	Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.9	67
6	1VY5\|1\|AY	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-RAY DIFFRACTION	2.55	67
7	4W2I\|1\|AY	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.7	67
8	4W2G\|1\|AY	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.55	67
9	4W2F\|1\|AY	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	67
10	4V51\|1\|AW	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-RAY DIFFRACTION	2.8	76
11	4V51\|1\|CW	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-RAY DIFFRACTION	2.8	76
12	4W2F\|1\|CY	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	66
13	1VY5\|1\|CY	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-RAY DIFFRACTION	2.55	66
14	1VY4\|1\|CY	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-RAY DIFFRACTION	2.6	66
15	4W2I\|1\|CY	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.7	66
16	4W2G\|1\|CY	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.55	66
17	4W2H\|1\|CY	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-RAY DIFFRACTION	2.7	5
18	2ZM5\|1\|C	Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe)	X-RAY DIFFRACTION	2.55	74
19	2ZXU\|1\|C	Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPP	X-RAY DIFFRACTION	2.75	74
20	3FOZ\|1\|C	Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe)	X-RAY DIFFRACTION	2.5	74
21	2ZXU\|1\|D	Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPP	X-RAY DIFFRACTION	2.75	69
22	2ZM5\|1\|D	Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe)	X-RAY DIFFRACTION	2.55	69
23	4W2I\|1\|AW	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.7	67
24	1VY4\|1\|AW	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-RAY DIFFRACTION	2.6	66
25	1VY5\|1\|AW	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-RAY DIFFRACTION	2.55	66
26	4W2F\|1\|AW	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	67
27	4W2G\|1\|AW	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.55	67
28	1VY4\|1\|CW	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-RAY DIFFRACTION	2.6	64
29	4W2F\|1\|CW	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	65
30	4W2G\|1\|CW	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.55	65
31	1VY5\|1\|CW	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-RAY DIFFRACTION	2.55	64
32	4W2I\|1\|CW	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.7	65
33	4W2E\|1\|w	Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.9	68
34	4V9D\|1\|BV	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	76
35	3L0U\|1\|A	The crystal structure of unmodified tRNAPhe from Escherichia coli	X-RAY DIFFRACTION	3	73
36	4V9D\|1\|AV	Structures of the bacterial ribosome in classical and hybrid states of tRNA binding	X-RAY DIFFRACTION	3	76
37	4V9H\|1\|AV	Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state	X-RAY DIFFRACTION	2.86	74
38	3FOZ\|1\|D	Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe)	X-RAY DIFFRACTION	2.5	69

Equivalence class NR_3.0_19951.1 Obsolete

Release history

Parents

Children