BGSU RNA Site //

Equivalence class NR_3.0_21280.21 Obsolete

#IFECompound(s)RNA source organismTitleMethodResolutionDate
17O7Y|1|A2 (rep)18S rRNAOryctolagus cuniculusRabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)ELECTRON MICROSCOPY2.22021-06-02
27O7Z|1|A218S rRNAOryctolagus cuniculusRabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)ELECTRON MICROSCOPY2.42021-06-02
37JQB|1|ArRNAOryctolagus cuniculusSARS-CoV-2 Nsp1 and rabbit 40S ribosome complexELECTRON MICROSCOPY2.72020-12-02
47UCK|1|918S rRNAOryctolagus cuniculus80S translation initiation complex with ac4c(-1) mRNA and HarringtonineELECTRON MICROSCOPY2.82022-06-01
56SGC|1|A118S ribosomal RNAOryctolagus cuniculusRabbit 80S ribosome stalled on a poly(A) tailELECTRON MICROSCOPY2.82019-12-04
67TOR|1|A18S18S rRNAOryctolagus cuniculusMammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20ELECTRON MICROSCOPY2.92022-05-25
77O80|1|A218S rRNAOryctolagus cuniculusRabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery siteELECTRON MICROSCOPY2.92021-06-02
86YAL|1|218S ribosomal RNAOryctolagus cuniculusMammalian 48S late-stage initiation complex with beta-globin mRNAELECTRON MICROSCOPY32020-04-08
96R5Q|1|K18S ribosomal RNAOryctolagus cuniculusStructure of XBP1u-paused ribosome nascent chain complex (post-state)ELECTRON MICROSCOPY32019-07-10

Release history

Release3.2333.2343.2353.2363.2373.238
Date2022-06-012022-06-082022-06-152022-06-222022-06-292022-07-06

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.0_21280.21NR_3.0_21280.203.233(8) 7TOR|1|A18S, 7O80|1|A2, 7O7Z|1|A2, 7O7Y|1|A2, 7JQB|1|A, 6YAL|1|2, 6SGC|1|A1, 6R5Q|1|K(1) 7UCK|1|9(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.0_21280.21NR_3.0_21280.223.239(9) 6R5Q|1|K, 6SGC|1|A1, 6YAL|1|2, 7JQB|1|A, 7O7Y|1|A2, 7O7Z|1|A2, 7O80|1|A2, 7TOR|1|A18S, 7UCK|1|9(0) (0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
17O80|1|A2Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery siteELECTRON MICROSCOPY2.91688
27O7Y|1|A2Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)ELECTRON MICROSCOPY2.21688
37O7Z|1|A2Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)ELECTRON MICROSCOPY2.41688
46SGC|1|A1Rabbit 80S ribosome stalled on a poly(A) tailELECTRON MICROSCOPY2.81697
56R5Q|1|KStructure of XBP1u-paused ribosome nascent chain complex (post-state)ELECTRON MICROSCOPY31698
67TOR|1|A18SMammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20ELECTRON MICROSCOPY2.91691
77UCK|1|980S translation initiation complex with ac4c(-1) mRNA and HarringtonineELECTRON MICROSCOPY2.81664
87JQB|1|ASARS-CoV-2 Nsp1 and rabbit 40S ribosome complexELECTRON MICROSCOPY2.71697
96YAL|1|2Mammalian 48S late-stage initiation complex with beta-globin mRNAELECTRON MICROSCOPY31743