BGSU RNA Site //

Equivalence class NR_3.0_21280.24 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
17O7Y|1|A2 (rep)Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)ELECTRON MICROSCOPY2.22021-06-02
27OYD|1|9Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1bELECTRON MICROSCOPY2.32022-07-20
37O7Z|1|A2Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)ELECTRON MICROSCOPY2.42021-06-02
47JQB|1|ASmall subunit ribosomal RNArRNAOryctolagus cuniculusEukaryaRF01960SARS-CoV-2 Nsp1 and rabbit 40S ribosome complexELECTRON MICROSCOPY2.72020-12-02
57UCK|1|9Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF0196080S translation initiation complex with ac4c(-1) mRNA and HarringtonineELECTRON MICROSCOPY2.82022-06-01
66SGC|1|A1Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Rabbit 80S ribosome stalled on a poly(A) tailELECTRON MICROSCOPY2.82019-12-04
77TOR|1|A18SSmall subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20ELECTRON MICROSCOPY2.92022-05-25
87O80|1|A2Small subunit ribosomal RNA18S rRNAOryctolagus cuniculusEukaryaRF01960Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery siteELECTRON MICROSCOPY2.92021-06-02
96YAL|1|2Small subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Mammalian 48S late-stage initiation complex with beta-globin mRNAELECTRON MICROSCOPY32020-04-08
106R5Q|1|KSmall subunit ribosomal RNA18S ribosomal RNAOryctolagus cuniculusEukaryaRF01960Structure of XBP1u-paused ribosome nascent chain complex (post-state)ELECTRON MICROSCOPY32019-07-10

Release history

Release3.2413.2423.2433.2443.2453.246
Date2022-07-272022-08-032022-08-102022-08-172022-08-242022-08-31

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.0_21280.24NR_3.0_21280.233.241(10) 6R5Q|1|K, 7TOR|1|A18S, 7OYD|1|9, 7O80|1|A2, 7O7Z|1|A2, 7O7Y|1|A2, 7JQB|1|A, 6YAL|1|2, 6SGC|1|A1, 7UCK|1|9(0) (0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.0_21280.24NR_3.0_21280.253.247(10) 6R5Q|1|K, 7TOR|1|A18S, 7OYD|1|9, 7O80|1|A2, 7O7Z|1|A2, 7O7Y|1|A2, 7JQB|1|A, 6YAL|1|2, 6SGC|1|A1, 7UCK|1|9(0) (0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16YAL|1|2Mammalian 48S late-stage initiation complex with beta-globin mRNAELECTRON MICROSCOPY31743
27JQB|1|ASARS-CoV-2 Nsp1 and rabbit 40S ribosome complexELECTRON MICROSCOPY2.71697
37UCK|1|980S translation initiation complex with ac4c(-1) mRNA and HarringtonineELECTRON MICROSCOPY2.81664
47TOR|1|A18SMammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20ELECTRON MICROSCOPY2.91691
56R5Q|1|KStructure of XBP1u-paused ribosome nascent chain complex (post-state)ELECTRON MICROSCOPY31698
66SGC|1|A1Rabbit 80S ribosome stalled on a poly(A) tailELECTRON MICROSCOPY2.81697
77O80|1|A2Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery siteELECTRON MICROSCOPY2.91688
87O7Z|1|A2Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)ELECTRON MICROSCOPY2.41688
97O7Y|1|A2Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (high resolution)ELECTRON MICROSCOPY2.21688
107OYD|1|9Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1bELECTRON MICROSCOPY2.31664