#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodÅDate
16D30|1|C (rep)RNA (5'-R(UP*U)-3')synthetic constructSyntheticStructure of human Usb1 with uridine-uridine, inactive H208Q mutantX-ray diffraction1.172018-09-05
26J7Z|1|CRNA (5'-R(P*UP*U)-3')synthetic constructSyntheticHuman mitochondrial Oligoribonuclease in complex with RNAX-ray diffraction2.012019-08-28
33ER9|1|D5'-R(UP*U)-3'Crystal structure of the heterodimeric vaccinia virus mRNA polyadenylate polymerase complex with UU and 3'-deoxy ATPX-ray diffraction2.062009-06-16
45KAL|1|YRNA (5'-R(*UP*U)-3')Trypanosoma bruceiEukaryaTerminal uridylyl transferase 4 from Trypanosoma brucei with bound UTP and UpUX-ray diffraction2.752016-10-26
54NIA|1|3RNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.822014-09-10
65KAL|1|ZRNA (5'-R(*UP*U)-3')Trypanosoma bruceiEukaryaTerminal uridylyl transferase 4 from Trypanosoma brucei with bound UTP and UpUX-ray diffraction2.752016-10-26
74NIA|1|7RNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.822014-09-10
84NIA|1|4RNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.822014-09-10
95NEW|1|CRNA (5'-R(P*UP*U)-3')Escherichia coliBacteriaRNA-RNA base stacking in the crystal structure of an Hfq6:RNA dimerX-ray diffraction2.512017-10-04
104NIA|1|vRNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.822014-09-10
114NIA|1|uRNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.822014-09-10
124NIA|1|6RNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.822014-09-10
134OQ9|1|7RNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.452014-09-10
144NIA|1|xRNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.822014-09-10
154NIA|1|1RNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.822014-09-10
164OQ9|1|4RNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.452014-09-10
174NIA|1|8RNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.822014-09-10
184OQ9|1|8RNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.452014-09-10
194OQ9|1|tRNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.452014-09-10
204OQ9|1|yRNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.452014-09-10
214NIA|1|5RNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.822014-09-10
224OQ9|1|xRNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.452014-09-10
234NIA|1|wRNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.822014-09-10
244NIA|1|tRNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.822014-09-10
254OQ9|1|6RNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.452014-09-10
264OQ8|1|DRNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using icosahedral constraintsX-ray diffraction1.452014-09-10
274NIA|1|zRNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.822014-09-10
284OQ9|1|wRNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.452014-09-10
294OQ9|1|5RNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.452014-09-10
304NIA|1|yRNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.822014-09-10
314NIA|1|2RNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-ray diffraction1.822014-09-10
324OQ9|1|uRNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.452014-09-10
334OQ9|1|zRNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.452014-09-10
344OQ9|1|2RNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.452014-09-10
354OQ9|1|vRNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.452014-09-10
364OQ9|1|3RNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.452014-09-10
371DDL|1|ERNA (5'-R(P*UP*U)-3')DESMODIUM YELLOW MOTTLE TYMOVIRUSX-ray diffraction2.72000-10-30
384OQ9|1|1RNA (5'-R(P*UP*U)-3')Tobacco virtovirus 1VirusesSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-ray diffraction1.452014-09-10

Release history

Release3.893.903.913.923.933.943.953.963.973.983.993.1003.1013.1023.1033.1043.1053.1063.1073.1083.1093.1103.1113.1123.1133.1143.1153.1163.1173.1183.1193.1203.1213.1223.1233.1243.1253.1263.1273.1283.1293.1303.1313.1323.1333.1343.1353.1363.1373.1383.1393.1403.1413.1423.1433.1443.1453.1463.1473.1483.1493.1503.1513.1523.1533.1543.1553.1563.1573.1583.1593.1603.1613.1623.1633.1643.1653.1663.1673.1683.1693.1703.1713.1723.1733.1743.1753.1763.1773.1783.1793.1803.1813.1823.1833.1843.1853.1863.1873.1883.1893.1903.1913.1923.1933.1943.1953.1963.1973.1983.1993.2003.2013.2023.2033.2043.2053.2063.2073.2083.2093.2103.2113.2123.2133.2143.2153.2163.2173.2183.2193.2203.2213.2223.2233.2243.2253.2263.2273.2283.2293.2303.2313.2323.2333.2343.2353.2363.2373.2383.2393.2403.2413.2423.2433.2443.2453.2463.2473.2483.2493.2503.2513.2523.2533.2543.2553.2563.2573.2583.2593.2603.2613.2623.2633.2643.2653.2663.2673.2683.2693.2703.2713.2723.2733.2743.2753.2763.2773.278
Date2019-08-282019-09-042019-09-112019-09-192019-09-252019-10-032019-10-092019-10-162019-10-232019-10-302019-11-062019-11-132019-11-202019-11-272019-12-042019-12-112019-12-182019-12-252020-01-012020-01-082020-01-152020-01-222020-01-292020-02-052020-02-122020-02-192020-02-262020-03-042020-03-112020-03-182020-03-252020-04-012020-04-082020-04-152020-04-222020-04-292020-05-062020-05-132020-05-202020-05-272020-06-032020-06-102020-06-172020-06-242020-07-012020-07-082020-07-152020-07-222020-07-292020-08-052020-08-122020-08-192020-08-262020-09-022020-09-092020-09-162020-09-232020-09-302020-10-072020-10-142020-10-212020-10-282020-11-042020-11-112020-11-182020-11-252020-12-022020-12-092020-12-162020-12-232020-12-302021-01-062021-01-132021-01-202021-01-272021-02-032021-02-102021-02-172021-02-242021-03-032021-03-102021-03-172021-03-242021-03-312021-04-072021-04-142021-04-212021-04-282021-05-052021-05-122021-05-192021-05-262021-06-022021-06-092021-06-162021-06-232021-06-302021-07-072021-07-142021-07-212021-07-282021-08-042021-08-112021-08-182021-08-252021-09-012021-09-082021-09-152021-09-222021-09-292021-10-062021-10-132021-10-202021-10-272021-11-032021-11-102021-11-172021-11-242021-12-012021-12-082021-12-152021-12-222021-12-292022-01-052022-01-122022-01-192022-01-262022-02-022022-02-092022-02-162022-02-232022-03-022022-03-092022-03-162022-03-232022-03-302022-04-062022-04-132022-04-202022-04-272022-05-042022-05-112022-05-182022-05-252022-06-012022-06-082022-06-152022-06-222022-06-292022-07-062022-07-132022-07-202022-07-272022-08-032022-08-102022-08-172022-08-242022-08-312022-09-072022-09-142022-09-212022-09-282022-10-052022-10-122022-10-192022-10-262022-11-022022-11-092022-11-162022-11-232022-11-302022-12-072022-12-142022-12-212022-12-282023-01-042023-01-112023-01-182023-01-252023-02-012023-02-082023-02-152023-02-222023-03-012023-03-082023-03-152023-03-222023-03-292023-04-052023-04-12

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14NIA|1|tSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.822
25KAL|1|ZTerminal uridylyl transferase 4 from Trypanosoma brucei with bound UTP and UpUX-RAY DIFFRACTION2.752
34NIA|1|6Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.822
44NIA|1|5Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.822
54OQ9|1|6Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.452
63ER9|1|DCrystal structure of the heterodimeric vaccinia virus mRNA polyadenylate polymerase complex with UU and 3'-deoxy ATPX-RAY DIFFRACTION2.062
74OQ9|1|uSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.452
84OQ9|1|ySatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.452
94OQ9|1|7Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.452
104NIA|1|uSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.822
114OQ9|1|8Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.452
124NIA|1|ySatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.822
134NIA|1|8Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.822
144NIA|1|7Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.822
151DDL|1|EDESMODIUM YELLOW MOTTLE TYMOVIRUSX-RAY DIFFRACTION2.72
164OQ9|1|1Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.452
174OQ9|1|zSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.452
184OQ9|1|4Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.452
194NIA|1|zSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.822
204NIA|1|4Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.822
214NIA|1|1Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.822
224OQ9|1|5Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.452
234NIA|1|vSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.822
244OQ9|1|2Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.452
255KAL|1|YTerminal uridylyl transferase 4 from Trypanosoma brucei with bound UTP and UpUX-RAY DIFFRACTION2.752
264OQ8|1|DSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using icosahedral constraintsX-RAY DIFFRACTION1.452
274NIA|1|xSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.822
286J7Z|1|CHuman mitochondrial Oligoribonuclease in complex with RNAX-RAY DIFFRACTION2.012
294NIA|1|2Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.822
304NIA|1|3Satellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.822
314OQ9|1|wSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.452
326D30|1|CStructure of human Usb1 with uridine-uridine, inactive H208Q mutantX-RAY DIFFRACTION1.172
334NIA|1|wSatellite Tobacco Mosaic Virus Refined at room temperature to 1.8 A Resolution using NCS RestraintsX-RAY DIFFRACTION1.822
345NEW|1|CRNA-RNA base stacking in the crystal structure of an Hfq6:RNA dimerX-RAY DIFFRACTION2.512
354OQ9|1|3Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.452
364OQ9|1|tSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.452
374OQ9|1|xSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.452
384OQ9|1|vSatellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraintsX-RAY DIFFRACTION1.452