Equivalence class NR_3.0_29090.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4J7L|1|B (rep) | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | synthetic construct | Synthetic | Crystal structure of mouse DXO in complex with PRODUCT RNA AND two MAGNESIUM ions | X-ray diffraction | 1.8 | 2013-03-27 | ||
| 2 | 5W0M|1|J | U5 single-stranded RNA | synthetic construct | Synthetic | Structure of human TUT7 catalytic module (CM) in complex with U5 RNA | X-ray diffraction | 2.3 | 2017-06-28 | ||
| 3 | 5BUD|1|E | RNA (5'-R(P*UP*UP*UP*U)-3') | Candida albicans | Eukarya | Crystal structure of Candida albicans Rai1 in complex with pU5-Mn2+ | X-ray diffraction | 1.99 | 2015-07-08 | ||
| 4 | 5W0M|1|I | U5 single-stranded RNA | synthetic construct | Synthetic | Structure of human TUT7 catalytic module (CM) in complex with U5 RNA | X-ray diffraction | 2.3 | 2017-06-28 | ||
| 5 | 5W0M|1|H | U5 single-stranded RNA | synthetic construct | Synthetic | Structure of human TUT7 catalytic module (CM) in complex with U5 RNA | X-ray diffraction | 2.3 | 2017-06-28 | ||
| 6 | 4J7M|1|B | RNA (5'-R(P*UP*(U37)P*(U37)P*UP*U)-3') | synthetic construct | Synthetic | Crystal structure of mouse DXO in complex with substrate mimic RNA and calcium ion | X-ray diffraction | 1.7 | 2013-03-27 | ||
| 7 | 5BUD|1|D | RNA (5'-R(P*UP*UP*UP*U)-3') | Candida albicans | Eukarya | Crystal structure of Candida albicans Rai1 in complex with pU5-Mn2+ | X-ray diffraction | 1.99 | 2015-07-08 | ||
| 8 | 6A4E|1|B | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | synthetic construct | Synthetic | Two linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H | X-ray diffraction | 2.45 | 2019-03-13 | ||
| 9 | 6A4E|1|D | RNA (5'-R(P*UP*UP*UP*UP*U)-3') | synthetic construct | Synthetic | Two linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H | X-ray diffraction | 2.45 | 2019-03-13 |
Release history
| Release | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-03-15 | 2019-03-22 | 2019-03-29 | 2019-04-05 | 2019-04-12 | 2019-04-19 | 2019-04-26 | 2019-05-03 | 2019-05-10 | 2019-05-17 | 2019-05-24 | 2019-05-31 | 2019-06-07 | 2019-06-14 | 2019-06-21 | 2019-06-28 | 2019-07-05 | 2019-07-12 | 2019-07-19 | 2019-07-26 | 2019-08-02 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_3.0_29090.1 | NR_3.0_02412.1 | 3.65 | (1) 4J7M|1|B | (8) 6A4E|1|D, 6A4E|1|B, 5W0M|1|J, 5W0M|1|I, 5W0M|1|H, 5BUD|1|E, 5BUD|1|D, 4J7L|1|B | (0) |
| NR_3.0_29090.1 | NR_3.0_51248.1 | 3.65 | (1) 5BUD|1|D | (8) 6A4E|1|D, 6A4E|1|B, 5W0M|1|J, 5W0M|1|I, 5W0M|1|H, 5BUD|1|E, 4J7M|1|B, 4J7L|1|B | (0) |
| NR_3.0_29090.1 | NR_3.0_91461.1 | 3.65 | (1) 5BUD|1|E | (8) 5W0M|1|I, 5W0M|1|H, 5BUD|1|D, 4J7M|1|B, 4J7L|1|B, 6A4E|1|D, 6A4E|1|B, 5W0M|1|J | (0) |
| NR_3.0_29090.1 | NR_3.0_94888.1 | 3.65 | (1) 4J7L|1|B | (8) 6A4E|1|D, 6A4E|1|B, 5W0M|1|J, 5W0M|1|I, 5W0M|1|H, 5BUD|1|E, 5BUD|1|D, 4J7M|1|B | (0) |
| NR_3.0_29090.1 | NR_3.0_97573.1 | 3.65 | (3) 5W0M|1|J, 5W0M|1|I, 5W0M|1|H | (6) 6A4E|1|D, 6A4E|1|B, 5BUD|1|E, 5BUD|1|D, 4J7M|1|B, 4J7L|1|B | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 5W0M|1|H | Structure of human TUT7 catalytic module (CM) in complex with U5 RNA | X-RAY DIFFRACTION | 2.3 | 4 |
| 2 | 5W0M|1|I | Structure of human TUT7 catalytic module (CM) in complex with U5 RNA | X-RAY DIFFRACTION | 2.3 | 4 |
| 3 | 5W0M|1|J | Structure of human TUT7 catalytic module (CM) in complex with U5 RNA | X-RAY DIFFRACTION | 2.3 | 4 |
| 4 | 5BUD|1|D | Crystal structure of Candida albicans Rai1 in complex with pU5-Mn2+ | X-RAY DIFFRACTION | 1.99 | 4 |
| 5 | 5BUD|1|E | Crystal structure of Candida albicans Rai1 in complex with pU5-Mn2+ | X-RAY DIFFRACTION | 1.99 | 5 |
| 6 | 4J7L|1|B | Crystal structure of mouse DXO in complex with PRODUCT RNA AND two MAGNESIUM ions | X-RAY DIFFRACTION | 1.8 | 5 |
| 7 | 4J7M|1|B | Crystal structure of mouse DXO in complex with substrate mimic RNA and calcium ion | X-RAY DIFFRACTION | 1.7 | 3 |
| 8 | 6A4E|1|B | Two linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H | X-RAY DIFFRACTION | 2.45 | 2 |
| 9 | 6A4E|1|D | Two linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H | X-RAY DIFFRACTION | 2.45 | 2 |