BGSU RNA Site //

Equivalence class NR_3.0_35054.2 Obsolete

#IFEStandardized nameMoleculeOrganismDomainRfamTitleMethodÅDate
14FAU|1|A (rep)Group II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exonX-RAY DIFFRACTION2.872012-11-14
24FAW|1|AGroup II catalytic intron D1-D4-1Group IIC intron, 5'-R(*A*UP*UP*UP*AP*UP*UP*A)-3'Oceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragmentX-RAY DIFFRACTION2.72012-11-14
34Y1O|1|AGroup II catalytic intron D1-D4-3group II intron, domain 1Oceanobacillus iheyensisBacteriaRF02001Oceanobacillus iheyensis group II intron domain 1X-RAY DIFFRACTION2.952015-10-14
44Y1N|1|AGroup II catalytic intron D1-D4-3group II intron, domain 1Oceanobacillus iheyensisBacteriaRF02001Oceanobacillus iheyensis group II intron domain 1 with iridium hexamineX-RAY DIFFRACTION32015-10-14
53G78|1|AGroup II catalytic intron D1-D4-1Group II intron, Ligated EXON productOceanobacillus iheyensisBacteriaRF01998Insight into group II intron catalysis from revised crystal structureX-RAY DIFFRACTION2.82010-02-16
64Y1N|1|BGroup II catalytic intron D1-D4-3group II intron, domain 1Oceanobacillus iheyensisBacteriaRF02001Oceanobacillus iheyensis group II intron domain 1 with iridium hexamineX-RAY DIFFRACTION32015-10-14
74E8Q|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+X-RAY DIFFRACTION2.842012-11-14
84E8N|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of NH4+ and Mg2+X-RAY DIFFRACTION2.962012-11-14
94FAR|1|AGroup II catalytic intron D1-D4-1Group IIC intronOceanobacillus iheyensisBacteriaRF01998Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exonX-RAY DIFFRACTION2.862012-11-14
104Y1O|1|BGroup II catalytic intron D1-D4-3group II intron, domain 1Oceanobacillus iheyensisBacteriaRF02001Oceanobacillus iheyensis group II intron domain 1X-RAY DIFFRACTION2.952015-10-14

Release history

Release2.452.462.472.482.492.502.512.522.532.542.552.562.572.582.592.602.612.622.632.642.652.662.672.682.692.702.712.722.732.742.752.762.772.782.792.802.812.822.832.842.852.862.872.882.892.902.912.922.932.942.952.962.972.982.992.1002.1012.1022.1032.1042.105
Date2015-10-162015-10-232015-10-302015-11-062015-11-132015-11-202015-11-272015-12-042015-12-112015-12-182015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-192016-02-262016-03-042016-03-112016-03-182016-03-252016-04-012016-04-082016-04-152016-04-222016-04-292016-05-062016-05-132016-05-202016-05-272016-06-032016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-022016-09-092016-09-162016-09-232016-09-302016-10-072016-10-142016-10-212016-10-282016-11-042016-11-112016-11-182016-11-252016-12-022016-12-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_3.0_35054.2NR_all_35054.12.45(6) 4FAU|1|A, 4FAR|1|A, 4FAW|1|A, 4E8Q|1|A, 4E8N|1|A, 3G78|1|A(4) 4Y1N|1|B, 4Y1N|1|A, 4Y1O|1|A, 4Y1O|1|B(14) 3BWP|1|A, 4E8M|1|A, 4E8R|1|A, 3EOH|1|A, 4E8V|1|A, 4DS6|1|A, 4FAX|1|A, 4E8P|1|A, 4FB0|1|A, 4E8T|1|A, 3EOG|1|A, 3IGI|1|A, 4E8K|1|A, 4FAQ|1|A

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_3.0_35054.2NR_3.0_35054.32.106(10) 3G78|1|A, 4Y1O|1|A, 4Y1N|1|B, 4Y1N|1|A, 4FAW|1|A, 4FAU|1|A, 4FAR|1|A, 4E8Q|1|A, 4E8N|1|A, 4Y1O|1|B(0) (0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
14FAW|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragmentX-RAY DIFFRACTION2.7390
24FAU|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exonX-RAY DIFFRACTION2.87395
34FAR|1|AStructure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exonX-RAY DIFFRACTION2.86390
44E8Q|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+X-RAY DIFFRACTION2.84393
54E8N|1|AStructure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of NH4+ and Mg2+X-RAY DIFFRACTION2.96393
63G78|1|AInsight into group II intron catalysis from revised crystal structureX-RAY DIFFRACTION2.8389
74Y1O|1|BOceanobacillus iheyensis group II intron domain 1X-RAY DIFFRACTION2.95256
84Y1N|1|AOceanobacillus iheyensis group II intron domain 1 with iridium hexamineX-RAY DIFFRACTION3249
94Y1N|1|BOceanobacillus iheyensis group II intron domain 1 with iridium hexamineX-RAY DIFFRACTION3259
104Y1O|1|AOceanobacillus iheyensis group II intron domain 1X-RAY DIFFRACTION2.95258